View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_28 (Length: 276)
Name: NF15357_low_28
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_28 |
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| [»] scaffold2107 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 13473660 - 13473882
Alignment:
| Q |
11 |
acatcatcatcgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgacc |
110 |
Q |
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| T |
13473660 |
acatcatcgtcgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgacc |
13473759 |
T |
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| Q |
111 |
atggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcacctt |
210 |
Q |
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| T |
13473760 |
atggtttacgaacgcatgtaaaccgcttaacagatttgacaggaagtttagagagaatac--agtacaatatcatcgggtatatagctactactcacctt |
13473857 |
T |
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| Q |
211 |
ctcaaatgttggagccatagaagga |
235 |
Q |
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| T |
13473858 |
ctcaaatgttggagccatagaagga |
13473882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 13473889 - 13473925
Alignment:
| Q |
230 |
gaaggagtacaactaaatcatgtaagcacaggttctg |
266 |
Q |
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| T |
13473889 |
gaaggagtacaactaaatcatgtaaccacacgttctg |
13473925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 9763572 - 9763456
Alignment:
| Q |
96 |
caaacaaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtata |
195 |
Q |
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| T |
9763572 |
caaacaaaagagaccatgatttgcgaacacaagaaaaatgcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatata |
9763473 |
T |
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| Q |
196 |
gctactactcaccttct |
212 |
Q |
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| T |
9763472 |
gctactactaaccttct |
9763456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 13280430 - 13280227
Alignment:
| Q |
21 |
cgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttgcg |
120 |
Q |
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| T |
13280430 |
cgtcgtcatcatcataccctgtttgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatttgcg |
13280331 |
T |
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| Q |
121 |
aacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgtt |
220 |
Q |
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| T |
13280330 |
aacacaagcaaagcgtttaagatgtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgtt |
13280231 |
T |
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| Q |
221 |
ggag |
224 |
Q |
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|||| |
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| T |
13280230 |
ggag |
13280227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 40399838 - 40399874
Alignment:
| Q |
201 |
tactcaccttctcaaatgttggagccatagaaggagt |
237 |
Q |
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| T |
40399838 |
tactcaccttctcaaatgttggagccatggaaggagt |
40399874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold2107
Description:
Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 55 - 140
Alignment:
| Q |
101 |
aaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatc |
186 |
Q |
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| T |
55 |
aaaagagaccatgatttacgaacgcaagtaaatcgcttgagagacttgatagggagtttagagagaataccaaatgcaatatcatc |
140 |
T |
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