View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_low_3 (Length: 577)

Name: NF15357_low_3
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_low_3
NF15357_low_3
[»] chr7 (5 HSPs)
chr7 (50-568)||(8704484-8704979)
chr7 (499-549)||(9210535-9210585)
chr7 (515-549)||(32714339-32714373)
chr7 (499-543)||(21568741-21568785)
chr7 (514-542)||(46078061-46078089)
[»] chr8 (6 HSPs)
chr8 (499-543)||(38750271-38750315)
chr8 (514-543)||(31916538-31916567)
chr8 (499-543)||(14956408-14956452)
chr8 (515-543)||(37444534-37444562)
chr8 (499-543)||(38353263-38353307)
chr8 (515-543)||(40859837-40859865)
[»] chr3 (3 HSPs)
chr3 (495-543)||(1508690-1508738)
chr3 (515-543)||(30574031-30574059)
chr3 (512-544)||(31365398-31365430)
[»] chr1 (4 HSPs)
chr1 (513-543)||(33541835-33541865)
chr1 (517-549)||(1829075-1829107)
chr1 (515-543)||(5894282-5894310)
chr1 (515-543)||(38116304-38116332)
[»] chr2 (2 HSPs)
chr2 (512-549)||(32592494-32592531)
chr2 (514-543)||(42659279-42659308)
[»] chr5 (2 HSPs)
chr5 (515-543)||(39105387-39105415)
chr5 (515-543)||(42573898-42573926)
[»] chr4 (1 HSPs)
chr4 (515-543)||(22030117-22030145)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 50 - 568
Target Start/End: Complemental strand, 8704979 - 8704484
Alignment:
Q  50 ttacccatcgttgattgcgttcataactcttgaacaccaacgataagaagttacatatcccgtgagggacatttttggaaatttaaagagtatgcgagca 149  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                
T  8704979 ttaccaatcgttgattgcgttcataactcttgaacaccaacgataagaagttacatatcccgcgagggacatttttggaaatttaaag------------ 8704892  T
Q  150 tttcaaggggcttattaagtaattttccaaataagaaaaaggcccatcagctcagtcaaatnnnnnnnnnncagcagcttccactttgaccctttgatca 249  Q
              |||||||||||||||||||||||| |||||||||||| |||||||||||||          |||||||||||||||||||||||||||||    
T  8704891 ----------cttattaagtaattttccaaataaaaaaaaggcccattagctcagtcaaataaaaaaaaa-cagcagcttccactttgaccctttgatca 8704803  T
Q  250 gaaacaacaagatagagtcgtcgcactgatctcaactcaccggaaaacgttgccggagttgatcctcagctaccggaaacagacagaaacaccaccacaa 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8704802 gaaacaacaagatagagtcgtcgcactgatctcaactcaccggaaaacgttgccggagttgatcctcagctaccggaaacagacagaaacaccgccacaa 8704703  T
Q  350 ggtttttccttttcaattcttttccgatttgtcgccgtggtgcaattccactgcgatttatatgataattataactttcttattccatgatgatgtaaaa 449  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8704702 ggtttttccttttcaattattttccgatttgtcgccgtggtgcaattccactgcgatttatatgataattataacttccttattccatgatgatgtaaaa 8704603  T
Q  450 atcaatgttatgaatgtatgtatgttgaattgtatgatttttgtttttaaaaattagcataggcaagcttatacataagcgcttatcatgataattgttt 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8704602 atcaatgttatgaatgtatgtatgttgaattgtatgatttttgtttttaaaaattagcataggcaagcttatacataagcgcttatcatgataactgttt 8704503  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 549
Target Start/End: Complemental strand, 9210585 - 9210535
Alignment:
Q  499 aaaattagcataggcaagcttatacataagcgcttatcatgataattgttt 549  Q
    |||| |||| || ||||||||||||||||||| |||||||||||| |||||    
T  9210585 aaaagtagcttatgcaagcttatacataagcgattatcatgataaatgttt 9210535  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 549
Target Start/End: Complemental strand, 32714373 - 32714339
Alignment:
Q  515 agcttatacataagcgcttatcatgataattgttt 549  Q
    ||||||||||||||||||||||||||||| |||||    
T  32714373 agcttatacataagcgcttatcatgataaatgttt 32714339  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 21568741 - 21568785
Alignment:
Q  499 aaaattagcataggcaagcttatacataagcgcttatcatgataa 543  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||    
T  21568741 aaaaatagcttatgcaagcttatacataagtgcttatcatgataa 21568785  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 542
Target Start/End: Complemental strand, 46078089 - 46078061
Alignment:
Q  514 aagcttatacataagcgcttatcatgata 542  Q
    |||||||||||||||||||||||||||||    
T  46078089 aagcttatacataagcgcttatcatgata 46078061  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 38750315 - 38750271
Alignment:
Q  499 aaaattagcataggcaagcttatacataagcgcttatcatgataa 543  Q
    |||| |||| || ||||||||||||||||||||||||||||||||    
T  38750315 aaaaatagcttatgcaagcttatacataagcgcttatcatgataa 38750271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 31916567 - 31916538
Alignment:
Q  514 aagcttatacataagcgcttatcatgataa 543  Q
    ||||||||||||||||||||||||||||||    
T  31916567 aagcttatacataagcgcttatcatgataa 31916538  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 14956408 - 14956452
Alignment:
Q  499 aaaattagcataggcaagcttatacataagcgcttatcatgataa 543  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||    
T  14956408 aaaaatagcttatgcaagcttatacataagtgcttatcatgataa 14956452  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 37444534 - 37444562
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  37444534 agcttatacataagcgcttatcatgataa 37444562  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 38353307 - 38353263
Alignment:
Q  499 aaaattagcataggcaagcttatacataagcgcttatcatgataa 543  Q
    |||| |||| || ||||||||||||||||||| ||||||||||||    
T  38353307 aaaaatagcttatgcaagcttatacataagcgattatcatgataa 38353263  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 40859837 - 40859865
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  40859837 agcttatacataagcgcttatcatgataa 40859865  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 1508690 - 1508738
Alignment:
Q  495 tttaaaaattagcataggcaagcttatacataagcgcttatcatgataa 543  Q
    |||||||| |||  || ||||||||||||||||||||||||||||||||    
T  1508690 tttaaaaaatagtttatgcaagcttatacataagcgcttatcatgataa 1508738  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 30574031 - 30574059
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  30574031 agcttatacataagcgcttatcatgataa 30574059  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 544
Target Start/End: Original strand, 31365398 - 31365430
Alignment:
Q  512 gcaagcttatacataagcgcttatcatgataat 544  Q
    ||||||||||||||||| |||||||||||||||    
T  31365398 gcaagcttatacataagtgcttatcatgataat 31365430  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 33541835 - 33541865
Alignment:
Q  513 caagcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||||    
T  33541835 caagcttatacataagcgcttatcatgataa 33541865  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 549
Target Start/End: Original strand, 1829075 - 1829107
Alignment:
Q  517 cttatacataagcgcttatcatgataattgttt 549  Q
    ||||||||||||||||||||||||||| |||||    
T  1829075 cttatacataagcgcttatcatgataagtgttt 1829107  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 5894282 - 5894310
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  5894282 agcttatacataagcgcttatcatgataa 5894310  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 38116304 - 38116332
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  38116304 agcttatacataagcgcttatcatgataa 38116332  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 32592531 - 32592494
Alignment:
Q  512 gcaagcttatacataagcgcttatcatgataattgttt 549  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  32592531 gcaagcttatacataagcgcttataatgataagtgttt 32592494  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 42659279 - 42659308
Alignment:
Q  514 aagcttatacataagcgcttatcatgataa 543  Q
    ||||||||||||||||||||||||||||||    
T  42659279 aagcttatacataagcgcttatcatgataa 42659308  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Complemental strand, 39105415 - 39105387
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  39105415 agcttatacataagcgcttatcatgataa 39105387  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 42573898 - 42573926
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  42573898 agcttatacataagcgcttatcatgataa 42573926  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Complemental strand, 22030145 - 22030117
Alignment:
Q  515 agcttatacataagcgcttatcatgataa 543  Q
    |||||||||||||||||||||||||||||    
T  22030145 agcttatacataagcgcttatcatgataa 22030117  T

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