View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_low_30 (Length: 267)

Name: NF15357_low_30
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_low_30
NF15357_low_30
[»] chr7 (8 HSPs)
chr7 (1-247)||(10007562-10007805)
chr7 (56-116)||(24163315-24163375)
chr7 (56-116)||(34117981-34118041)
chr7 (56-116)||(40142815-40142875)
chr7 (56-116)||(41850642-41850702)
chr7 (59-110)||(29365666-29365717)
chr7 (56-110)||(6838427-6838481)
chr7 (56-109)||(48838365-48838418)
[»] chr4 (7 HSPs)
chr4 (56-110)||(25477587-25477641)
chr4 (12-110)||(48361104-48361201)
chr4 (9-110)||(30191948-30192048)
chr4 (56-116)||(2583124-2583184)
chr4 (56-116)||(17284777-17284837)
chr4 (56-116)||(53225686-53225746)
chr4 (72-116)||(53658422-53658466)
[»] chr5 (6 HSPs)
chr5 (56-109)||(18391540-18391593)
chr5 (10-110)||(21488280-21488379)
chr5 (65-116)||(22101954-22102005)
chr5 (56-104)||(1248887-1248935)
chr5 (56-92)||(31785941-31785977)
chr5 (56-116)||(39239841-39239901)
[»] chr2 (7 HSPs)
chr2 (56-116)||(29988938-29988998)
chr2 (56-110)||(5281220-5281274)
chr2 (64-116)||(4410827-4410879)
chr2 (56-116)||(28014319-28014379)
chr2 (56-110)||(41153153-41153207)
chr2 (56-92)||(22333567-22333603)
chr2 (56-92)||(32308325-32308361)
[»] chr6 (3 HSPs)
chr6 (56-110)||(28630805-28630859)
chr6 (56-116)||(3064929-3064989)
chr6 (56-116)||(9077632-9077692)
[»] scaffold0028 (1 HSPs)
scaffold0028 (56-116)||(71891-71951)
[»] chr8 (4 HSPs)
chr8 (56-116)||(1223169-1223229)
chr8 (64-132)||(35149718-35149790)
chr8 (56-110)||(8803280-8803334)
chr8 (56-116)||(10839809-10839869)
[»] chr3 (3 HSPs)
chr3 (56-116)||(36985202-36985262)
chr3 (56-116)||(37010641-37010701)
chr3 (56-89)||(20028512-20028545)
[»] chr1 (5 HSPs)
chr1 (56-116)||(15342983-15343043)
chr1 (56-110)||(50155340-50155394)
chr1 (56-93)||(9387265-9387302)
chr1 (56-116)||(6793640-6793700)
chr1 (56-116)||(15286051-15286111)
[»] scaffold0123 (1 HSPs)
scaffold0123 (56-116)||(28131-28191)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 10007562 - 10007805
Alignment:
Q  1 actcaaactaatactccctcctgtcatatttataataaacatttgacnnnnnnnn-attcatttcataaattatgtatttgatctatattatacacaaaa 99  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||| |||||||| ||||||| |    
T  10007562 actcaaactaatactccctcctgtcctatttataataaacatttgactttttttttattcatttcataaattatgtatttggtctatattctacacaaga 10007661  T
Q  100 tacattaattatacaat----ctaaaaaatcaactttataaataggaccggaaaataggaccggagggagtaataatgttggacaccattcgactagaag 195  Q
    |||||||||||||||||    ||||||| |||||||| |        |    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10007662 tacattaattatacaatgaatctaaaaagtcaacttttt--------cttataaataggaccggagggagtaataattttggacaccattcgactagaag 10007753  T
Q  196 gaaagtaggtggtttagtgagacattaagtgcacagtttgaaaatggttgct 247  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10007754 gaaagtaggtggtttactgagacattaagtgcacagtttgaaaatggttgct 10007805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 24163375 - 24163315
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| |||||| || |||||||| ||| ||| ||||||||||||||||||    
T  24163375 attcattgcataaatgatgtatatggtctatattctacgcaagatacattaattatacaat 24163315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 34117981 - 34118041
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||||| || |||| |||||||||||| |||||    
T  34117981 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaat 34118041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 40142815 - 40142875
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||||  || |||| ||||||||||||||||||    
T  40142815 attcattgcataaataatgtatttggtctatatcctaaacaagatacattaattatacaat 40142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 41850702 - 41850642
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||||| || || ||||||||||||||| ||||    
T  41850702 attcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaat 41850642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 29365666 - 29365717
Alignment:
Q  59 catttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    |||| ||||||| |||||||||||||||||| || || ||||||||||||||    
T  29365666 cattgcataaatgatgtatttgatctatattctataccaaatacattaatta 29365717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 6838481 - 6838427
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| ||||||||| |||||||| || |||| ||||||||||||    
T  6838481 attcattgcataaatgatgtatttggtctatattctagacaagatacattaatta 6838427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 48838418 - 48838365
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatt 109  Q
    ||||||| ||||||| ||||||||| |||||||| || || |||||||||||||    
T  48838418 attcattacataaatgatgtatttggtctatattttataccaaatacattaatt 48838365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 25477587 - 25477641
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  25477587 attcattgcataaatgatgtatttgatctatattctacacaaaatacatcaatta 25477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 48361201 - 48361104
Alignment:
Q  12 tactccctcctgtcatatttataataaacatttgacnnnnnnnnattcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    |||||||||||||| ||||||||| |||||||||||        ||||||| ||||||| ||||||||| |||||||| || ||||||||||| |||||    
T  48361201 tactccctcctgtcctatttataagaaacatttgacttttttg-attcattgcataaatgatgtatttggtctatattctagacaaaatacatcaatta 48361104  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 30192048 - 30191948
Alignment:
Q  9 taatactccctcctgtcatatttataataaacatttgacnnnnnnnnattcatttcataaattatgtatttgatctatattatacacaaaatacattaat 108  Q
    ||||||||||||| ||| ||||||||| |||||||| ||        ||||||| ||||||| ||||||||| |||||||| || ||||||||||| |||    
T  30192048 taatactccctccggtcgtatttataagaaacatttaacttttttg-attcattgcataaatgatgtatttggtctatattctagacaaaatacatcaat 30191950  T
Q  109 ta 110  Q
    ||    
T  30191949 ta 30191948  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 2583124 - 2583184
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| || |||||| ||||||||||| |||||||| | |||||| |||||    
T  2583124 attcattgcataaatgatatatttggtctatattatagacaaaatataataattacacaat 2583184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 17284777 - 17284837
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| |||||| || |||||||| || |||| |||||| |||||||||||    
T  17284777 attcattgcataaatgatgtatgtggtctatattctagacaagatacatcaattatacaat 17284837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 53225686 - 53225746
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||| ||| || || ||||||||||||||| ||||    
T  53225686 attcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaat 53225746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 53658422 - 53658466
Alignment:
Q  72 atgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  53658422 atgtatttggtctatattctagacaaaatacattagttatacaat 53658466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 18391540 - 18391593
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatt 109  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| |||||||||||    
T  18391540 attcattgcataaataatgtatttgatctatattataaacaagatacattaatt 18391593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 21488280 - 21488379
Alignment:
Q  10 aatactccctcctgtcatatttataataaacatttgacnnnnnnnnattcatttcataaattatgtatttgatctatattatacacaaaatacattaatt 109  Q
    ||||||||||| |||| ||||||||| ||| |||||||        ||||||| ||||||| ||||||||| |||||||| || ||||||||||||||||    
T  21488280 aatactccctcatgtcctatttataagaaatatttgactttttta-attcattgcataaataatgtatttggtctatattctagacaaaatacattaatt 21488378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 22102005 - 22101954
Alignment:
Q  65 ataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    |||||| |||||||||||||||||| || |||| |||||||||||| |||||    
T  22102005 ataaataatgtatttgatctatattttagacaagatacattaattacacaat 22101954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 1248935 - 1248887
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacat 104  Q
    |||||||| |||||| |||||||||||||||||| || |||| ||||||    
T  1248935 attcatttgataaatgatgtatttgatctatattctagacaagatacat 1248887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 31785977 - 31785941
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattata 92  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  31785977 attcatttaataaattatgtatgtgatctatattata 31785941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 39239901 - 39239841
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| || |||||||||||||||  | |||| |||||||||||| |||||    
T  39239901 attcattgcataaataatatatttgatctatattcaatacaagatacattaattacacaat 39239841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 29988998 - 29988938
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||    
T  29988998 attcattgcataaatgatgtatttgatctatattctagacaaaatatattaattacacaat 29988938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 5281220 - 5281274
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| |||||||||||||||||| || || ||||||||||||||    
T  5281220 attcattgcataaatgatgtatttgatctatattttataccaaatacattaatta 5281274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 4410827 - 4410879
Alignment:
Q  64 cataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| |||||||||||||||||| || |||| |||||||||||| |||||    
T  4410827 cataaatgatgtatttgatctatattttaaacaagatacattaattacacaat 4410879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 28014379 - 28014319
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||| |||| |||| ||||| ||||||||||||    
T  28014379 attcattgcataaatgatgtatttggtctatactatagacaagatacaataattatacaat 28014319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 41153153 - 41153207
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| ||||||||| ||||||||||| || |||||||| |||||    
T  41153153 attcattgcataaatgatgtatttggtctatattataaaccaaatacatcaatta 41153207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 22333567 - 22333603
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattata 92  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  22333567 attcattgcataaataatgtatttgatctatattata 22333603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 32308361 - 32308325
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattata 92  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  32308361 attcatttaataaattatgtatgtgatctatattata 32308325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 28630859 - 28630805
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||||||||||||| ||||||||||| |||| |||||| |||||    
T  28630859 attcattgcataaattatgtatttggtctatattatagacaagatacatcaatta 28630805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 3064989 - 3064929
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| |||||||  |||||||| |||||||| || |||| ||||||||||||||||||    
T  3064989 attcattgcataaatggtgtatttggtctatattttatacaagatacattaattatacaat 3064929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 9077692 - 9077632
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||| ||||| |||||||| || |||| |||||||||||| |||||    
T  9077692 attcattgcataaatgatgcatttggtctatattctagacaagatacattaattacacaat 9077632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 71891 - 71951
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    |||||||  |||||||||||||||  |||||||| || ||||||||||||||||| |||||    
T  71891 attcattgtataaattatgtatttagtctatattttatacaaaatacattaattacacaat 71951  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 1223229 - 1223169
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||||||||||||| |||||||| |  |||| |||||||||||| |||||    
T  1223229 attcattgcataaattatgtatttggtctatatttttgacaagatacattaattacacaat 1223169  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 35149718 - 35149790
Alignment:
Q  64 cataaattatgtatttgatctatattatacacaaaatacattaattatac----aatctaaaaaatcaacttt 132  Q
    ||||||| ||||||||| |||||||| || |||| |||||||||||| ||    |||||||||||||||||||    
T  35149718 cataaatgatgtatttggtctatattctagacaagatacattaattacacaataaatctaaaaaatcaacttt 35149790  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 8803334 - 8803280
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| ||||||||| |||||||| || |||| ||||||||||||    
T  8803334 attcattacataaatgatgtatttggtctatattctagacaagatacattaatta 8803280  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 10839869 - 10839809
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||||| || || || |||||||||||| ||||    
T  10839869 attcattgcataaatgatgtatttggtctatattctataccaagtacattaattattcaat 10839809  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 36985262 - 36985202
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||  |||||||| || |||| ||||||||||||||||||    
T  36985262 attcattgcataaataatgtatttagtctatattctaaacaagatacattaattatacaat 36985202  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 37010701 - 37010641
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||  |||||||| || |||| ||||||||||||||||||    
T  37010701 attcattgcataaataatgtatttagtctatattctaaacaagatacattaattatacaat 37010641  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 20028512 - 20028545
Alignment:
Q  56 attcatttcataaattatgtatttgatctatatt 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  20028512 attcatttcataaatgatgtatttgatctatatt 20028545  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 15343043 - 15342983
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| ||||||||| |||||||| || |||| |||||||||||| |||||    
T  15343043 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaat 15342983  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 50155340 - 50155394
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaatta 110  Q
    ||||||| ||||||| ||||||||| ||||||||||| || |||||||| |||||    
T  50155340 attcattgcataaatgatgtatttggtctatattatagaccaaatacatcaatta 50155394  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 9387265 - 9387302
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatac 93  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  9387265 attcattacataaatgatgtatttgatctatattatac 9387302  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6793700 - 6793640
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| |||||||||| ||||| |||| || || |||||||||||| ||||    
T  6793700 attcattgcataaatgatgtatttgacctataatatatactaagtacattaattattcaat 6793640  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 15286051 - 15286111
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    |||||||  |||||| |||||||||||||||||| || || || |||||||||||| ||||    
T  15286051 attcattatataaatgatgtatttgatctatattctataccaagtacattaattattcaat 15286111  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 28131 - 28191
Alignment:
Q  56 attcatttcataaattatgtatttgatctatattatacacaaaatacattaattatacaat 116  Q
    ||||||| ||||||| |||||||||||||||||| || |||| ||| || |||||| ||||    
T  28131 attcattgcataaatgatgtatttgatctatattttagacaagatatatcaattattcaat 28191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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