View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15357_low_32 (Length: 260)
Name: NF15357_low_32
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37652182 - 37651951
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37652182 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
37652083 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37652082 |
acctacaaatttcaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37651983 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37651982 |
tcagtcgtctgttgatccctgttccttatgct |
37651951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37640983 - 37640752
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37640983 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccctggtgttcaatgccccattcttcctgggactaactat |
37640884 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640883 |
acctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37640784 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37640783 |
tcagtcgtctgttgatccctgttccttatgct |
37640752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37635155 - 37634924
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37635155 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactat |
37635056 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37635055 |
acctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37634956 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37634955 |
tcagtcgtctgttgatccctgttccttatgct |
37634924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37638069 - 37637838
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37638069 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactat |
37637970 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637969 |
acctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37637870 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37637869 |
tcagtcgtctgttgatccctgttccttatgct |
37637838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37646357 - 37646126
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37646357 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactat |
37646258 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646257 |
acctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37646158 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37646157 |
tcagtcgtctgttgatccctgttccttatgct |
37646126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 37649270 - 37649039
Alignment:
| Q |
17 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37649270 |
accattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactat |
37649171 |
T |
|
| Q |
117 |
acctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37649170 |
acctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatct |
37649071 |
T |
|
| Q |
217 |
tcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
37649070 |
tcagtcgtctgttgatccctgttccttatgct |
37649039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 32388404 - 32388261
Alignment:
| Q |
105 |
ggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtg |
204 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||| ||||| | |||||| |||||| |
|
|
| T |
32388404 |
ggaaccaactacacctacaaattccaggttaaggatcaaattggtagttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtg |
32388305 |
T |
|
| Q |
205 |
gtcttagaatcttcagtcgtctgttgatccctgttccctatgct |
248 |
Q |
| |
|
| ||||| ||| ||| || ||||||||||||| || |||||| |
|
|
| T |
32388304 |
gaattagagtctacagccgattgttgatccctgtcccatatgct |
32388261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University