View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_34 (Length: 252)
Name: NF15357_low_34
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 38250661 - 38250909
Alignment:
| Q |
6 |
tccgaacctcgataaatcttgtgttcttaatctc--tccttttatcgcagtttgctggctcagtttcataacacttgtctagttcttttgctgcattttg |
103 |
Q |
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| T |
38250661 |
tccgaacctcaataaatcttgtgctcttaatctctctccttttatcgcagtttgctggctcagtttcataacaattgtctagttcttttgctgcattctg |
38250760 |
T |
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| Q |
104 |
caatgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctataaagggtcgagaaaaaggcgcgtcttgttcatcaaggttt |
203 |
Q |
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| T |
38250761 |
cgatgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctataaagggtcgagaaaaaggcgcttcttgttcatcaaggttt |
38250860 |
T |
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| Q |
204 |
ggaagatgccttgaaagtgaatcagaggtatggctaaaaactagaaatc |
252 |
Q |
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| T |
38250861 |
ggaagatgccttgaaagtgcatcagaggtatggctaaaaactagaaatc |
38250909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 37458963 - 37458757
Alignment:
| Q |
7 |
ccgaacctcgataaatcttgtgttcttaatctctccttttatcgcagtttgctggctcagtttcataacacttgtctagttcttttgctgcattttgcaa |
106 |
Q |
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| T |
37458963 |
ccgaaccttgataaatcttgtgtccttcttctttccttttattgcagtttgctggcccagtttcataatactggcctggttcttttgctgcattatgcga |
37458864 |
T |
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| Q |
107 |
tgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctataaagggtcgagaaaaaggcgcgtcttgttcatcaaggtttgga |
206 |
Q |
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| T |
37458863 |
cgagttcaataaaa-------ttgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcccttctt-tttatcaaggtttgga |
37458772 |
T |
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| Q |
207 |
agatgccttgaaagt |
221 |
Q |
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| T |
37458771 |
atatgccttgaaagt |
37458757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 22178532 - 22178691
Alignment:
| Q |
9 |
gaacctcgataaatcttgtgttcttaatctctccttttatcgcagtttgctggctcagtttcataacacttgtc-----------tagttcttttgctgc |
97 |
Q |
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| T |
22178532 |
gaacctcgataaatcttgtgtcctt------tcctttcattgcaatttgctggctcagtttcataacaattgtcatcagattgcctggttcttttgctgc |
22178625 |
T |
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| Q |
98 |
attttgcaatgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctat |
163 |
Q |
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| T |
22178626 |
actctacgatgagttcaataaaattcaaaattgaaaaatttgctggtgacaacgaccttggtctat |
22178691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 302114 - 302042
Alignment:
| Q |
6 |
tccgaacctcgataaatcttgtgttcttaa--tctctccttttatcgcagtttgctggctcagtttcataaca |
76 |
Q |
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| T |
302114 |
tccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataaca |
302042 |
T |
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