View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15357_low_37 (Length: 236)
Name: NF15357_low_37
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_37 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 10761521 - 10761302
Alignment:
| Q |
17 |
acataaacggtcttcttaaatgaaagtggtgtaccacattaatgagtgtttgattaagtgcatcaggtctcacaatactcttatgtctctcgcgttctgc |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10761521 |
acataaaaggtcttcttaaatgaaagtggtgtaccacattaatgagtgtttgattaagtgcatcaggtctcacaatactcttatgtctctcgcgttctgc |
10761422 |
T |
|
| Q |
117 |
caaacgacacgtgtaccccatcatgactccttcacgtggcacttcctttaggcctgaaggcccaaaactataacacgatgttcttatttcagccacatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10761421 |
caaacgacacgtgtaccccatcatgactccttcacgtggcacttcctttaggcctgaaggcccaaaactataacacgatgttcttatttcagccacatta |
10761322 |
T |
|
| Q |
217 |
ttgtctctcggctttgaata |
236 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
10761321 |
ttgtctctcgactttgaata |
10761302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University