View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_5 (Length: 490)
Name: NF15357_low_5
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 7422846 - 7422372
Alignment:
| Q |
1 |
aaacattataatat--gaataattgaatgtcataatatgaataaaatgcattacaatatacctgttgaattgcaaactctgtgattgctttcagatccct |
98 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422846 |
aaacattataatatatgaataattgaatgtcataatatgaataaaatgcattacaatatacctgttgaattgcaaactctgtgattgctttcagatccct |
7422747 |
T |
|
| Q |
99 |
ggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcctctaataccatattcctgagccagagacttgtgagcatca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7422746 |
ggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcctctaataccatattcatgagccagagacttgtgagcatca |
7422647 |
T |
|
| Q |
199 |
gcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatataggagtcagaacctcacagtgtccacaccgtggagcaaaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422646 |
gcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatataggagtcagaacctcacagtgtccacaccgtggagcaaaga |
7422547 |
T |
|
| Q |
299 |
attcaacaagaacaacttcatttgaattcagaaccttggagttgaagttgtcaggagtgagttgaagaacggttgaggaagaaccgtagatagcttgaga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422546 |
attcaacaagaacaacttcatttgaattcagaaccttggagttgaagttgtcaggagtgagttgaagaacggttgaggaagaaccgtagatagcttgaga |
7422447 |
T |
|
| Q |
399 |
gaggatgagattgttaaagagtaagatagttagagcaatgcatgagagtttcgccattgttgaagaagggtatat |
473 |
Q |
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| T |
7422446 |
gaggatgagattgttaaagagtaagatagttagagcaatgcatgagagtttcgccattgttgaagaagggtatat |
7422372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 7512268 - 7512166
Alignment:
| Q |
55 |
tatacctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttgga |
153 |
Q |
| |
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||||| ||||||| |||||| | |||||||| ||| | ||| |||||||||||||||||||| ||||| || || |||| |||| |||||| |||||||| |
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| T |
7512268 |
tatacatgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttgga |
7512169 |
T |
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| Q |
154 |
aat |
156 |
Q |
| |
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||| |
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| T |
7512168 |
aat |
7512166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 7516552 - 7516450
Alignment:
| Q |
55 |
tatacctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttgga |
153 |
Q |
| |
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||||| ||||||| |||||| | |||||||| ||| | ||| |||||||||||||||||||| ||||| || || |||| |||| |||||| |||||||| |
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| T |
7516552 |
tatacatgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttgga |
7516453 |
T |
|
| Q |
154 |
aat |
156 |
Q |
| |
|
||| |
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|
| T |
7516452 |
aat |
7516450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 173 - 334
Target Start/End: Original strand, 36639114 - 36639275
Alignment:
| Q |
173 |
cctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatataggagtcagaacctc |
272 |
Q |
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||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
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| T |
36639114 |
cctgagccagagattggtgagcatcagcatcaagtgctgctacagtaactacaccctttaacacagtagctgccttctcccatattggagtcagagcctt |
36639213 |
T |
|
| Q |
273 |
acagtgtccacaccgtggagcaaagaattcaacaagaacaacttcatttgaattcagaacct |
334 |
Q |
| |
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|||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36639214 |
acagtgcccgcaccatggagcaaagaattcaacaagaacaactccatttgaattcagaacct |
36639275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 465
Target Start/End: Original strand, 36640704 - 36640839
Alignment:
| Q |
330 |
aaccttggagttgaagttgtcaggagtgagttgaagaacggttgaggaagaaccgtagatagcttgagagaggatgagattgttaaagagtaagatagtt |
429 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||| ||| ||||| |||||||||||||| ||||| ||||||||| |
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| T |
36640704 |
aaccttggacttgaagttgttaggagtgagttgaagaacaggtgaggaagaaccgtagagagcgtgagaaaggatgagattgttgaagagaaagatagtt |
36640803 |
T |
|
| Q |
430 |
agagcaatgcatgagagtttcgccattgttgaagaa |
465 |
Q |
| |
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| T |
36640804 |
acagcaatgaatgagagttttgccattgttgaagaa |
36640839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 36638093 - 36638212
Alignment:
| Q |
58 |
acctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatc |
157 |
Q |
| |
|
|||||||||| |||||| |||| ||| | ||| | || |||||||||||||||||||| ||||| ||||| || |||||| |||||||||||||||||| |
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| T |
36638093 |
acctgttgaagtgcaaattctgcgatcggtttaacgtctctggctccttggtaatcaactggtggttttccaggtgaaaacacctttatagttggaaatc |
36638192 |
T |
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| Q |
158 |
ctctaataccatattcctga |
177 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36638193 |
ctctaataccatattcctga |
36638212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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