View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_9 (Length: 399)
Name: NF15357_low_9
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 183 - 385
Target Start/End: Complemental strand, 32325730 - 32325528
Alignment:
| Q |
183 |
taatatttgtgcttacttgagtgaccagtgagggacaggaaaatcagaaaatagaccagaaaagccatagctagagaaagtgattttgaagtgaataaga |
282 |
Q |
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| T |
32325730 |
taatatttgtgcttacttgagtgaccagtgagggacaggaaaatcagaaaatagaccagaaaagccatagctagagaaagtgattttgaagtgaatcaga |
32325631 |
T |
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| Q |
283 |
tgtttgaagcagagtgaaagaaaaagagatgaattgattgatgatgagagaacaagcgnnnnnnnncttccctcacccgcttatggcttttcacgttcat |
382 |
Q |
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| T |
32325630 |
tgtttgaagcagagcgaaagaaaaagagatgaattgattgatgatgagagaacaagcgttttttttcctccctcacccgcttatggcttttcacgttctt |
32325531 |
T |
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| Q |
383 |
ctc |
385 |
Q |
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||| |
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| T |
32325530 |
ctc |
32325528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32325913 - 32325797
Alignment:
| Q |
1 |
aataatatttcatacagaaaacctttcatacaatgaatttaaacaacaacaaaagtttcataccaatcataggaatcaccaacaccagggaaaataaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32325913 |
aataatatttcatacagaaaacctttcatacaatgaatttaaacaacaacaaaagtttcataccaatcataggaattaccaacaccagggaaaataaaaa |
32325814 |
T |
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| Q |
101 |
aagacgagtaaaaatag |
117 |
Q |
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| T |
32325813 |
aggacgagtaaaaatag |
32325797 |
T |
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