View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15358_high_3 (Length: 424)
Name: NF15358_high_3
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15358_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 38485016 - 38485416
Alignment:
| Q |
18 |
gattctcatgataggaggctttggagaaagatatgtaagtacgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaacacctgtttcgac |
117 |
Q |
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| T |
38485016 |
gattctcatgataggaggctttggagaaagatatgtaagtatgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaacacctgtttcgac |
38485115 |
T |
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| Q |
118 |
agattatcagacctgatagtgaagaacattctattgtgactgctatgtttcaagaaattgatcattcaattgagattgggaaattcaccaaagtattcaa |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485116 |
agattatcagacctgatagtgaagaaaattctattgtgactgctatgtttcaagaagttgatcattcaattgagattgggaaattcaccaaagtattcaa |
38485215 |
T |
|
| Q |
218 |
aactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaaagaaagattctaaccgattggtggacacccttcag |
317 |
Q |
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| T |
38485216 |
aactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaaagaaagattctaaccgattggtggacacccttcag |
38485315 |
T |
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| Q |
318 |
gctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggctaaaggaggatggtttggctccacaagattcagcttcatctc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38485316 |
gctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggctaaaggaggatggtttggctccacaagattcagcttcttctc |
38485415 |
T |
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| Q |
418 |
a |
418 |
Q |
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| T |
38485416 |
a |
38485416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 355
Target Start/End: Original strand, 30119512 - 30119749
Alignment:
| Q |
118 |
agattatcagacctgatagtgaagaacattctattgtgactgctatgtttcaagaaattgatcattcaattgagattgggaaattcaccaaagtattcaa |
217 |
Q |
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||||||||| ||| | |||||||| ||||| |||||||||| | ||||||| ||||||||||| || ||||||||| ||||||||| || |||||| |
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| T |
30119512 |
agattatcaaacccaacagtgaagagcattcgattgtgactgttctgtttcaggaaattgatcactctcttgagattgagaaattcactaatacattcaa |
30119611 |
T |
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| Q |
218 |
aactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaaagaaagattctaaccgattggtggacacccttcag |
317 |
Q |
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||| |||||||| |||||||| || |||||||||||||||| | || || || || || ||||||||||| | | ||||| | ||||||||| |
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| T |
30119612 |
aacaactgcactgccccagcttcaccacaagttgataaaacttgtcgagttattgaacaagcctgtcaaagattctaatcaagtggtgaatacccttcag |
30119711 |
T |
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| Q |
318 |
gctctttatgagatttctatccgagattttttcaagga |
355 |
Q |
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|| |||||||||||| ||||| |||| |||||||||| |
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| T |
30119712 |
gcgctttatgagattgctatcagagaccttttcaagga |
30119749 |
T |
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