View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15358_high_9 (Length: 236)

Name: NF15358_high_9
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15358_high_9
NF15358_high_9
[»] chr8 (11 HSPs)
chr8 (1-221)||(36210277-36210498)
chr8 (1-179)||(36197159-36197338)
chr8 (1-190)||(36188796-36188986)
chr8 (1-179)||(36214863-36215042)
chr8 (1-174)||(36213619-36213799)
chr8 (1-139)||(36208190-36208329)
chr8 (1-139)||(36185006-36185146)
chr8 (10-70)||(36199303-36199363)
chr8 (1-96)||(36201333-36201426)
chr8 (104-175)||(36202822-36202893)
chr8 (1-67)||(36202718-36202784)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36210277 - 36210498
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  36210277 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactctttt 36210376  T
Q  101 nnn-ggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataaatgtccacc 199  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210377 ttttggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataaatgtccacc 36210476  T
Q  200 ccactactcccacatatcaaat 221  Q
    ||||||||||||||||||||||    
T  36210477 ccactactcccacatatcaaat 36210498  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 36197159 - 36197338
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactc-nnn 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||  | |||||| |||| ||||||||||||||||||| ||||||||||| |||||        
T  36197159 tgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctcttcttatagctgtttttgcagaatgcttgactctttt 36197258  T
Q  100 nnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttat 179  Q
        ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36197259 ttctggcccacataatccaatgatattttctccttggtctctcactcttagtgcactcataatttgttctttaaccttat 36197338  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36188796 - 36188986
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactc-nnn 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||  ||||||| |||||||||        
T  36188796 tgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactctttt 36188895  T
Q  100 nnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataa 190  Q
        ||||||||||||||||||||||||||||| | ||||||||| | || ||||||| |||||||   ||||||||||  ||||||||||    
T  36188896 ttttggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgaattttaaccttacgatcaatataa 36188986  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 36214863 - 36215042
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgac-tcnnn 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||||| | ||||||||| ||| |        
T  36214863 tgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaatgcttgactttttc 36214962  T
Q  100 nnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttat 179  Q
        ||||||||||||||||||||| ||| ||  ||||||||||| |||| ||||||| |||| ||||||||||| ||||    
T  36214963 atctggcccgcataatccgattatactttatctctggtctctcactcttaatgcactcgtaatctgttctttaacattat 36215042  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 36213619 - 36213799
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgac------aatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgac 94  Q
    |||||||||||||||||||||||| ||||||      ||||||||||||| | |||||| |||| ||||||||||||||||||| | ||||| ||   ||    
T  36213619 tgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaaagccttac 36213718  T
Q  95 tcnnnnnnn-ggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaac 174  Q
    ||        || ||||||||||||||||||||||||||||||||||||||  ||| |||| || |||| || ||||||||    
T  36213719 tctttcatccgggccgcataatccgattatattttctccttggtctctcacttttaatgcattcgtaatctgatctttaac 36213799  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36208190 - 36208329
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgact-cnnn 99  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||| | |||||| |||| ||| ||||| ||| |||||   ||||||||| ||||         
T  36208190 tgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactatttt 36208289  T
Q  100 nnnnggcccgcataatccgattatattttctccttggtct 139  Q
        ||||||||||||||||||||||||||||||||||||    
T  36208290 atctggcccgcataatccgattatattttctccttggtct 36208329  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36185006 - 36185146
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgac--tcnn 98  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||| | |||||| |||| ||| ||||| ||| |||||   ||||||||| |||  |       
T  36185006 tgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactatttt 36185105  T
Q  99 nnnnnggcccgcataatccgattatattttctccttggtct 139  Q
         | ||||||||||||||||||||||||||||||||||    
T  36185106 atctggccccgcataatccgattatattttctccttggtct 36185146  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 36199303 - 36199363
Alignment:
Q  10 tctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttat 70  Q
    ||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||    
T  36199303 tctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctcttcttat 36199363  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36201333 - 36201426
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactc 96  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||| | |||||  |||| |||||||||||||||| || | |||||| || |||||    
T  36201333 tgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattgatc--tctcagctcttcttatagctgcttttacagaatacttgactc 36201426  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 36202822 - 36202893
Alignment:
Q  104 ggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaacc 175  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||||  |||||| || || ||||||    
T  36202822 ggcccgcataatccaattatgttttctccttggtctctcactcttagtgcatccataatctggtccttaacc 36202893  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36202718 - 36202784
Alignment:
Q  1 tgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttct 67  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||| | |||||| |||| | ||||||    
T  36202718 tgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctcagatcttct 36202784  T

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