View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15358_low_1 (Length: 727)
Name: NF15358_low_1
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15358_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 26086 - 25803
Alignment:
| Q |
18 |
aaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaaataaaaaatattcagactacaattgatagtggctccaaagta |
117 |
Q |
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| T |
26086 |
aaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaaataaaaaatattcagactacaattgatagtggctccaaagta |
25987 |
T |
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| Q |
118 |
gtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactgga |
217 |
Q |
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| T |
25986 |
gtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactgga |
25887 |
T |
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| Q |
218 |
tacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
302 |
Q |
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| T |
25886 |
tacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtc-agcacttgcgttttaacatgcatatga |
25803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 4e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 492 - 714
Target Start/End: Original strand, 18097214 - 18097438
Alignment:
| Q |
492 |
agggaaaataaaaagtacttgttttatattaatattaattaaattaccttctctccnnnnnnnnnnnt--tttaattaaattatcactacaatnnnnnnn |
589 |
Q |
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| T |
18097214 |
agggaaaataaaaagtagttgttttatattaatattgattaaattaccttctctcaaaaaaaaaattaaattaaattaaattatcactacaataaaaaaa |
18097313 |
T |
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| Q |
590 |
ncacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
689 |
Q |
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| T |
18097314 |
acacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
18097413 |
T |
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| Q |
690 |
tattcgtttcttagtgatctctgct |
714 |
Q |
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| T |
18097414 |
tattcgtttcttagtgatctctgct |
18097438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 18097009 - 18097056
Alignment:
| Q |
436 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
483 |
Q |
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| T |
18097009 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
18097056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 18096939 - 18096973
Alignment:
| Q |
366 |
ataattttattcccattcccaaaataaaccgctag |
400 |
Q |
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| T |
18096939 |
ataattttattcccattcccaaaataaatcgctag |
18096973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 123 - 302
Target Start/End: Complemental strand, 21352585 - 21352405
Alignment:
| Q |
123 |
attccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagaca--aggatgctgaacaagcctacgtaattatgagagactggatac |
220 |
Q |
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|||||||| ||||||||| ||||||||||||||| | | |||| || | |||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
21352585 |
attccctgatagaggtcacggatttgcccaccgatccggatctctgaacgaagacgcgaggatgctgaacaagcttatgtaattatgagagactggatat |
21352486 |
T |
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| Q |
221 |
atgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
302 |
Q |
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| T |
21352485 |
ttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aacacttgcgtcttaacatgcatatga |
21352405 |
T |
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