View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15358_low_4 (Length: 482)

Name: NF15358_low_4
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15358_low_4
NF15358_low_4
[»] chr4 (10 HSPs)
chr4 (12-253)||(4876007-4876248)
chr4 (248-471)||(4876025-4876248)
chr4 (15-252)||(1326416-1326653)
chr4 (243-468)||(1326428-1326653)
chr4 (291-421)||(44185499-44185629)
chr4 (62-192)||(44185499-44185629)
chr4 (169-220)||(48742791-48742842)
chr4 (263-314)||(48742791-48742842)
chr4 (14-46)||(44185632-44185664)
chr4 (437-469)||(44185632-44185664)
[»] chr3 (2 HSPs)
chr3 (15-252)||(5387600-5387841)
chr3 (256-468)||(5387625-5387841)
[»] chr8 (22 HSPs)
chr8 (110-250)||(26531529-26531669)
chr8 (248-373)||(26531544-26531669)
chr8 (176-235)||(18140242-18140301)
chr8 (248-307)||(18140242-18140301)
chr8 (185-252)||(27183127-27183194)
chr8 (185-252)||(27231091-27231158)
chr8 (256-312)||(12646281-12646337)
chr8 (171-227)||(12646281-12646337)
chr8 (256-312)||(12651413-12651469)
chr8 (171-227)||(12651413-12651469)
chr8 (248-298)||(27183144-27183194)
chr8 (248-298)||(27231091-27231141)
chr8 (176-236)||(18095605-18095665)
chr8 (248-307)||(12724038-12724097)
chr8 (176-235)||(12724038-12724097)
chr8 (248-307)||(18095606-18095665)
chr8 (260-312)||(12704921-12704973)
chr8 (171-223)||(12704921-12704973)
chr8 (185-236)||(31135837-31135888)
chr8 (248-290)||(18081401-18081443)
chr8 (193-235)||(18081401-18081443)
chr8 (256-298)||(31135837-31135879)
[»] scaffold0831 (2 HSPs)
scaffold0831 (44-252)||(1975-2183)
scaffold0831 (251-439)||(1975-2163)
[»] chr2 (3 HSPs)
chr2 (185-236)||(13280333-13280384)
chr2 (248-298)||(13280334-13280384)
chr2 (247-315)||(29353273-29353341)
[»] chr6 (2 HSPs)
chr6 (246-314)||(34259097-34259165)
chr6 (169-235)||(34259097-34259163)
[»] chr5 (2 HSPs)
chr5 (172-236)||(9763550-9763614)
chr5 (248-311)||(9763551-9763614)
[»] scaffold2107 (2 HSPs)
scaffold2107 (246-285)||(34-73)
scaffold2107 (198-235)||(34-71)
[»] chr7 (2 HSPs)
chr7 (248-315)||(25627371-25627438)
chr7 (168-235)||(25627371-25627438)
[»] chr1 (2 HSPs)
chr1 (185-236)||(40399718-40399769)
chr1 (248-298)||(40399718-40399768)
[»] scaffold0129 (2 HSPs)
scaffold0129 (247-293)||(9631-9677)
scaffold0129 (190-235)||(9632-9677)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 4876248 - 4876007
Alignment:
Q  12 tcatcatcatgttgaaatgaaactggccatttcaatttaaccctattctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876248 tcatcatcatgttgaaatgaaactggccatttcaatttaaccatattctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtg 4876149  T
Q  112 gcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggcgcggaacatgttcatgaaattagggtt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4876148 gcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggtgcggaacatgttcatgaaattagggtt 4876049  T
Q  212 ttgaaataaaagagacgatgatttggaggcacatgtaaatca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4876048 ttgaaataaaagagacgatgatttggaggcacatgtaaatca 4876007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 248 - 471
Target Start/End: Original strand, 4876025 - 4876248
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacacttatctct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876025 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcatatctatgcatcgatcattgtacgatcacacttatctct 4876124  T
Q  348 ttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgctgaggaatttgagaatagggttaaattgaaatggcc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4876125 ttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgctgaggaatttgagaatatggttaaattgaaatggcc 4876224  T
Q  448 agtttcatttcaacatgatgatga 471  Q
    ||||||||||||||||||||||||    
T  4876225 agtttcatttcaacatgatgatga 4876248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 1326653 - 1326416
Alignment:
Q  15 tcatcatgttgaaatgaaactggccatttcaatttaaccctattctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggca 114  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||  ||| |||||||||||||||  |  ||||| ||| ||||||||||||    
T  1326653 tcatcctgttgaaatgaaactggccatttcaaattgaccctattctcaaatttgtcaccagagagcaaatacaattctgaaccttcttgtggatgtggca 1326554  T
Q  115 atatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggcgcggaacatgttcatgaaattagggttttg 214  Q
    |||||||||| ||||| || |||||||| |||| || ||||| ||| | |||||||||||||||||||| ||| |||||   |||||||| |||||||||    
T  1326553 atatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacataggcatgaaataagggttttg 1326454  T
Q  215 aaataaaagagacgatgatttggaggcacatgtaaatc 252  Q
    ||||||||||||| ||| |||| | ||||| |||||||    
T  1326453 aaataaaagagactatggtttgcatgcacacgtaaatc 1326416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 243 - 468
Target Start/End: Original strand, 1326428 - 1326653
Alignment:
Q  243 catgtaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacactta 342  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||   ||||| ||| |||||||||||||||||||| | ||| ||||| || |||| ||    
T  1326428 catgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacata 1326527  T
Q  343 tctctttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgctgaggaatttgagaatagggttaaattgaaa 442  Q
    |||||| || ||||| |||||||||||||||||||||| ||| |||||  |  ||||||||||||||| |||  |||||||||||||||| || ||||||    
T  1326528 tctcttccttaatataaaggagatattgccacatccacaagaaggttcagaattgtatttgctctctggtgacaaatttgagaatagggtcaatttgaaa 1326627  T
Q  443 tggccagtttcatttcaacatgatga 468  Q
    |||||||||||||||||||| |||||    
T  1326628 tggccagtttcatttcaacaggatga 1326653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 291 - 421
Target Start/End: Original strand, 44185499 - 44185629
Alignment:
Q  291 tgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaatattaaggagatattgccacatccacgagacggttc 390  Q
    |||||| | |||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  44185499 tgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcgccacatcctcgagacggttc 44185598  T
Q  391 caatctgtatttgctctctgctgaggaattt 421  Q
    |||||||||||||||||||||||||||||||    
T  44185599 caatctgtatttgctctctgctgaggaattt 44185629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 44185629 - 44185499
Alignment:
Q  62 aaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgat 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||     
T  44185629 aaattcctcagcagagagcaaatacagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatgag 44185530  T
Q  162 cgatgcatagatatgaaattggcgcggaaca 192  Q
    |||||||||||||||||||||| | ||||||    
T  44185529 cgatgcatagatatgaaattggtgtggaaca 44185499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 48742791 - 48742842
Alignment:
Q  169 tagatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataa 220  Q
    |||||||||||| |  |||| |||||||||||||||||| ||||||||||||    
T  48742791 tagatatgaaatagttgcggtacatgttcatgaaattagagttttgaaataa 48742842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 48742842 - 48742791
Alignment:
Q  263 ttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatcta 314  Q
    |||||||||||| |||||||||||||||||| ||||  | ||||||||||||    
T  48742842 ttatttcaaaactctaatttcatgaacatgtaccgcaactatttcatatcta 48742791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 44185664 - 44185632
Alignment:
Q  14 atcatcatgttgaaatgaaactggccatttcaa 46  Q
    |||||| ||||||||||||||||||||||||||    
T  44185664 atcatcctgttgaaatgaaactggccatttcaa 44185632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 44185632 - 44185664
Alignment:
Q  437 ttgaaatggccagtttcatttcaacatgatgat 469  Q
    |||||||||||||||||||||||||| ||||||    
T  44185632 ttgaaatggccagtttcatttcaacaggatgat 44185664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 5387841 - 5387600
Alignment:
Q  15 tcatcatgttgaaat--gaaactggccatttcaatttaacccta--ttctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgt 110  Q
    ||||| |||||||||  ||||||||||||||||| || ||  ||  | || |||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  5387841 tcatcctgttgaaatttgaaactggccatttcaaattgacaatacctccttaaattcctcagcagagagcaaatacagattggaaccatcttgaggatgt 5387742  T
Q  111 ggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggcgcggaacatgttcatgaaattagggt 210  Q
    |||||||||||||| |||| ||| | |||| | |||||||| |||||||| ||||||||| |||||||||||| ||||||||  | ||||||||||||||    
T  5387741 ggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcataaatatgaaattggtgcggaacaattgcatgaaattagggt 5387642  T
Q  211 tttgaaataaaagagacgatgatttggaggcacatgtaaatc 252  Q
    ||||||||||||||||| | |||||||||||||| |||||||    
T  5387641 tttgaaataaaagagaccaagatttggaggcacaggtaaatc 5387600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 256 - 468
Target Start/End: Original strand, 5387625 - 5387841
Alignment:
Q  256 gtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaat 355  Q
    ||||||||||||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||| |||||||| |||||||| | |||| | ||| ||    
T  5387625 gtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatttatgcatcgctcattgtatgatcacacctttctcatcctatat 5387724  T
Q  356 attaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgctgaggaatttgagaa--tagggttaaattgaaatggccagtttc 453  Q
    || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| || |  ||  || || |||||||||||||||||    
T  5387725 ataaaggagatattgccacatcctcaagatggttccaatctgtatttgctctctgctgaggaatttaaggaggtattgtcaatttgaaatggccagtttc 5387824  T
Q  454 --atttcaacatgatga 468  Q
      ||||||||| |||||    
T  5387825 aaatttcaacaggatga 5387841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 26531669 - 26531529
Alignment:
Q  110 tggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggcgcggaacatgttcatgaaattaggg 209  Q
    |||| |||||||||| ||||||||||||||||||||||  | |||||||||  |||||||||||||||||||   ||||||||| ||||| ||| |||||    
T  26531669 tggccatatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaacatattcataaaactaggg 26531570  T
Q  210 ttttgaaataaaagagacgatgatttggaggcacatgtaaa 250  Q
    |||| ||||||||||||| |||||||| | ||||| |||||    
T  26531569 ttttcaaataaaagagaccatgatttgcacgcacaagtaaa 26531529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 248 - 373
Target Start/End: Original strand, 26531544 - 26531669
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacacttatctct 347  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||| |||||||||   |||||||||||||||||||  ||||||||| |  ||||||||||||    
T  26531544 aaatcatggtctcttttatttgaaaaccctagttttatgaatatgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctct 26531643  T
Q  348 ttctaaatattaaggagatattgcca 373  Q
    |||||||||| |||||||||| ||||    
T  26531644 ttctaaatataaaggagatatggcca 26531669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 18140242 - 18140301
Alignment:
Q  176 gaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  18140242 gaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattt 18140301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 18140301 - 18140242
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttc 307  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  18140301 aaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaatttc 18140242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 27183194 - 27183127
Alignment:
Q  185 gcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatc 252  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  27183194 gcggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatc 27183127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 27231091 - 27231158
Alignment:
Q  185 gcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatc 252  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  27231091 gcggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatc 27231158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 12646281 - 12646337
Alignment:
Q  256 gtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatc 312  Q
    |||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||    
T  12646281 gtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12646337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 12646337 - 12646281
Alignment:
Q  171 gatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagac 227  Q
    ||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  12646337 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagac 12646281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 12651413 - 12651469
Alignment:
Q  256 gtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatc 312  Q
    |||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||    
T  12651413 gtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12651469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 12651469 - 12651413
Alignment:
Q  171 gatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagac 227  Q
    ||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  12651469 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagac 12651413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 27183144 - 27183194
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgc 298  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  27183144 aaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgc 27183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 27231141 - 27231091
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgc 298  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  27231141 aaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgc 27231091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 18095665 - 18095605
Alignment:
Q  176 gaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 236  Q
    |||||||| |||||||||||||||||||||||||||||| || | ||| ||| ||||||||    
T  18095665 gaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgaccatgatttg 18095605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 12724038 - 12724097
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttc 307  Q
    ||||||| ||||||||| || |||||| ||| ||||||||||||||||||| ||||||||    
T  12724038 aaatcatggtctcttttgttccaaaactctattttcatgaacatgttccgcaccaatttc 12724097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 12724097 - 12724038
Alignment:
Q  176 gaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    |||||||| ||||||||||||||||||| ||| |||||| || ||||||||| |||||||    
T  12724097 gaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgattt 12724038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 18095606 - 18095665
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttc 307  Q
    ||||||| ||| ||| | || |||||||||||||||||||||||||||||| ||||||||    
T  18095606 aaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttccgcaccaatttc 18095665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 12704921 - 12704973
Alignment:
Q  260 cttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatc 312  Q
    ||||||||||||| |||| |||| ||||||||||||||  |||||||||||||    
T  12704921 cttttatttcaaagccctgattttatgaacatgttccgaaccaatttcatatc 12704973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 12704973 - 12704921
Alignment:
Q  171 gatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaag 223  Q
    |||||||||||||  |||||||||||||| |||| |||| |||||||||||||    
T  12704973 gatatgaaattggttcggaacatgttcataaaatcagggctttgaaataaaag 12704921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 31135837 - 31135888
Alignment:
Q  185 gcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 236  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||| ||||    
T  31135837 gcggaacatgttcataaaaatagggttttcaaataaaagagaccatggtttg 31135888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 18081401 - 18081443
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaaca 290  Q
    ||||||| ||||||| | |||||||||||||||||||||||||    
T  18081401 aaatcatggtctcttctttttcaaaaccctaatttcatgaaca 18081443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 18081443 - 18081401
Alignment:
Q  193 tgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    ||||||||||||||||||||||||| | ||||||| |||||||    
T  18081443 tgttcatgaaattagggttttgaaaaagaagagaccatgattt 18081401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 298
Target Start/End: Complemental strand, 31135879 - 31135837
Alignment:
Q  256 gtctcttttatttcaaaaccctaatttcatgaacatgttccgc 298  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||    
T  31135879 gtctcttttatttgaaaaccctatttttatgaacatgttccgc 31135837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 1975 - 2183
Alignment:
Q  44 caatttaaccctattctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataa 143  Q
    |||||| |||| ||||||||| | |||| ||||||| ||||||| | ||||||| | | |   || ||||| ||||||||| |||||||| || ||| |     
T  1975 caatttgacccgattctcaaacttctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttatatttaggaaaagacat 2074  T
Q  144 gtgtgatcgtacaatgatcgatgcatagatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcac 243  Q
    |||| || ||||||||||||||||||| |||||||||||  ||| ||||| |||||||||| ||| | || ||||||||||||| |||| ||| | ||||    
T  2075 gtgtcattgtacaatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgcatgcac 2174  T
Q  244 atgtaaatc 252  Q
    | |||||||    
T  2175 aagtaaatc 2183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 439
Target Start/End: Complemental strand, 2163 - 1975
Alignment:
Q  251 tcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttc 350  Q
    |||| ||||||||||||| || | ||| |||||||||| ||||| |||  ||||||||||| ||||||||||||||||||| || |||| | ||| || |    
T  2163 tcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcc 2064  T
Q  351 taaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgctgaggaatttgagaatagggttaaattg 439  Q
    ||||||| ||||||||| ||||| ||   | | | ||||||| | ||||||| ||||||| |||| | ||||||||| |||| ||||||    
T  2063 taaatataaaggagatactgccatatgatcaacatggttccactttgtatttcctctctgatgagaagtttgagaatcgggtcaaattg 1975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 13280384 - 13280333
Alignment:
Q  185 gcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 236  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||    
T  13280384 gcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatttg 13280333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 13280334 - 13280384
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgc 298  Q
    ||||||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  13280334 aaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgc 13280384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 29353341 - 29353273
Alignment:
Q  247 taaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctat 315  Q
    |||| ||| |||||| |||||| |||||||||||||||| | ||||||| | |  ||||||||||||||    
T  29353341 taaaacatggtctctcttatttgaaaaccctaatttcatcaccatgttcggggataatttcatatctat 29353273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 34259165 - 34259097
Alignment:
Q  246 gtaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatcta 314  Q
    ||||||||| |||||| ||||| ||| || ||  |||||||||||||||||||  ||||||||||||||    
T  34259165 gtaaatcatggtctctcttattacaagacactcgtttcatgaacatgttccgcaacaatttcatatcta 34259097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 34259097 - 34259163
Alignment:
Q  169 tagatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    ||||||||||||||  |||||||||||||||||||  || || ||| ||||| |||||| |||||||    
T  34259097 tagatatgaaattgttgcggaacatgttcatgaaacgagtgtcttgtaataagagagaccatgattt 34259163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 9763614 - 9763550
Alignment:
Q  172 atatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 236  Q
    |||||| ||||| ||| ||||||||||| ||| ||||||||| ||| ||||||||| ||||||||    
T  9763614 atatgagattggtgcgaaacatgttcataaaaatagggttttcaaacaaaagagaccatgatttg 9763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 9763551 - 9763614
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatat 311  Q
    ||||||| ||||||||| ||| ||||||||| ||| ||||||||||| ||| ||||| ||||||    
T  9763551 aaatcatggtctcttttgtttgaaaaccctatttttatgaacatgtttcgcaccaatctcatat 9763614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 73 - 34
Alignment:
Q  246 gtaaatcatcgtctcttttatttcaaaaccctaatttcat 285  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  73 gtaaatcatggtctcttttatttcaaagccctaatttcat 34  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 34 - 71
Alignment:
Q  198 atgaaattagggttttgaaataaaagagacgatgattt 235  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  34 atgaaattagggctttgaaataaaagagaccatgattt 71  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 25627371 - 25627438
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcgccaatttcatatctat 315  Q
    ||||||| |||||| |||||| ||||||||  |||||||| ||||||||||   ||||||||||||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgttccgcaataatttcatatctat 25627438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 25627438 - 25627371
Alignment:
Q  168 atagatatgaaattggcgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    ||||||||||||||   |||||||||| ||||||||  |||||||| |||||| |||||| |||||||    
T  25627438 atagatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgattt 25627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 40399718 - 40399769
Alignment:
Q  185 gcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 236  Q
    |||| ||||||||||||||||||||||||  |||||||||| | ||||||||    
T  40399718 gcggtacatgttcatgaaattagggttttcgaataaaagagtccatgatttg 40399769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 40399768 - 40399718
Alignment:
Q  248 aaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgc 298  Q
    ||||||| | ||||||||||  |||||||||||||||||||||||| ||||    
T  40399768 aaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgc 40399718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 9631 - 9677
Alignment:
Q  247 taaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgt 293  Q
    |||||||| |||||  |||||| ||||||||||||||||||||||||    
T  9631 taaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgt 9677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 9677 - 9632
Alignment:
Q  190 acatgttcatgaaattagggttttgaaataaaagagacgatgattt 235  Q
    |||||||||||||||||||||||| ||||||  ||||| |||||||    
T  9677 acatgttcatgaaattagggttttcaaataagcgagaccatgattt 9632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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