View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15358_low_5 (Length: 453)
Name: NF15358_low_5
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15358_low_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 116 - 453
Target Start/End: Original strand, 2101063 - 2101421
Alignment:
| Q |
116 |
atgtgtagaaggattagtctatactttagaatataatgtctgatacgt----------------cagtatactgaccatagtctatgctcatcagtcacc |
199 |
Q |
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| T |
2101063 |
atgtgtagaaggattggtctatactttagaatataatgtctgatacgttgtagactgttgtaaacagtatactgaccatagtctatgctcatcagtcacc |
2101162 |
T |
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| Q |
200 |
tttgtagtattttatatgaatgacaca--ttatcacacaggttcttt-acttaaaa--agcatctaaacggataagatttactgtagactgtaataaatc |
294 |
Q |
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| T |
2101163 |
tttgtagtatcttatatgaatgacacacattatcacacaacttcttttacttaaaaaaagcatctaaacggataagatttactgtagactgtaataaatc |
2101262 |
T |
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| Q |
295 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcaataagtctcttcattttacttttgcattaaaaacggaaaataag |
394 |
Q |
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| T |
2101263 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcgataagtctcttcattttacttttgcattaaaaacggaaaataag |
2101362 |
T |
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| Q |
395 |
agatattttcttgctaaaacgattctaatatctgcctataaatagtactagtagttacc |
453 |
Q |
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| T |
2101363 |
acatattttcttgctaaaacgattctaatatctgcctataaatagtactagtagttacc |
2101421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 2100895 - 2100997
Alignment:
| Q |
17 |
atatttgatttacgtacaaaaatattcaatgtctaatatcctgtaaattgtagcatacaatatacaaaccattcaatcattctagtcttcaatgattgaa |
116 |
Q |
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| T |
2100895 |
atatttggtttacatacaaaaatattgaacgtctgatatgctggaaattgtagcatacaatatacaaacgattcaatcattgttgtcttcaatgattgaa |
2100994 |
T |
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| Q |
117 |
tgt |
119 |
Q |
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||| |
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| T |
2100995 |
tgt |
2100997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 39186883 - 39186777
Alignment:
| Q |
176 |
catagtctatgctcatcagtcacctttgtagtattttatatgaatgacacattatcacacaggttc-tttactt-aaaaagcatctaaacggataagatt |
273 |
Q |
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| T |
39186883 |
catagtctatgctcatgagtcacctttgcagtatcttat-tgaatgacacagtatcacacaagttcttttacttaaaaaagaatctaaacagataggatt |
39186785 |
T |
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| Q |
274 |
tactgtag |
281 |
Q |
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|||||||| |
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| T |
39186784 |
tactgtag |
39186777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 39185797 - 39185760
Alignment:
| Q |
416 |
attctaatatctgcctataaatagtactagtagttacc |
453 |
Q |
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| T |
39185797 |
attctaatatctgcctataaatagtattagtacttacc |
39185760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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