View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15358_low_7 (Length: 445)
Name: NF15358_low_7
Description: NF15358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15358_low_7 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0038 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 28327433 - 28327853
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28327433 |
gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
28327532 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28327533 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
28327632 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28327633 |
ttgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattatttttcttttgtctta |
28327732 |
T |
|
| Q |
309 |
tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28327733 |
tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaata |
28327832 |
T |
|
| Q |
409 |
ttttcatttcaaggttgtaag |
429 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28327833 |
ttttcatttcaaggttgtaag |
28327853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 28505069 - 28505489
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505069 |
gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
28505168 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505169 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
28505268 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28505269 |
ttgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattatttttcttttgtctta |
28505368 |
T |
|
| Q |
309 |
tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505369 |
tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaata |
28505468 |
T |
|
| Q |
409 |
ttttcatttcaaggttgtaag |
429 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28505469 |
ttttcatttcaaggttgtaag |
28505489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 28236411 - 28236662
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| | |||||||| |
|
|
| T |
28236411 |
gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtatt |
28236510 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
|||||||| ||||||||||||| || || |||| |||||| | | |||||| |||||||| ||||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
28236511 |
ggaatggcctaaatatccttcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgag |
28236610 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtc |
262 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
28236611 |
ttgcgtggcacagtgaagg--tatgtgtaaatgtaatgatttttttccctcgtc |
28236662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 28296016 - 28295774
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | |||||||| |
|
|
| T |
28296016 |
gagatgagctcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtatt |
28295917 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
|||||||| |||||||||||||||| || |||| |||||| ||| |||||| ||||||||| |||||||||||||| ||||||||||| |||| || | |
|
|
| T |
28295916 |
ggaatggcctaaatatccttcacggatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttggg |
28295817 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt |
253 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28295816 |
ttgcatggcacaatgaagg--tatgtgtaaatgtaatgatttttt |
28295774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 28516057 - 28516299
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | |||||||| |
|
|
| T |
28516057 |
gagatgagctcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtatt |
28516156 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
|||||||| |||||||||||||||| || |||| |||||| ||| |||||| ||||||||| |||||||||||||| ||||||||||| |||| || | |
|
|
| T |
28516157 |
ggaatggcctaaatatccttcacggatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttggg |
28516256 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt |
253 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28516257 |
ttgcatggcacaatgaagg--tatgtgtaaatgtaatgatttttt |
28516299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 264 - 418
Target Start/End: Original strand, 28524324 - 28524478
Alignment:
| Q |
264 |
tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt |
363 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
28524324 |
tataagaatattcattcattcattaattctttttcttttgccgtatattttgcagaggtttgtgaatatgaaagagttaaatctagacaattgtcaattt |
28524423 |
T |
|
| Q |
364 |
ttaacacggatacacgacgtctccaatctcccaaatttagaaatattttcatttc |
418 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28524424 |
ttaacacggatacatgacgtctccaacctcccaaatttagaaatattttcatttc |
28524478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 28187303 - 28187544
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| |||||||||||||||||||| ||||||||| ||||| |||||| |||| | ||| | |||||||| |
|
|
| T |
28187303 |
gagatgaactggagaagatgcaaaagctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtttgagagtatt |
28187402 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
||||||||| ||||||||||||||| || |||| |||||| |||||||||| ||||||||| ||||||| |||||| ||||||||||| |||||| |||| |
|
|
| T |
28187403 |
ggaatggcaaaaatatccttcacgggtcataccatctgat-ttttcccaaagaaactttctatatgcaaactacagcaaagtgactttacatcatttgag |
28187501 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt |
253 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28187502 |
ttgcgtggcacaatgaagg--tatgtgtaaatgtaatgatttttt |
28187544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 420
Target Start/End: Original strand, 28238477 - 28238624
Alignment:
| Q |
273 |
attcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacgg |
372 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28238477 |
attcgttcattaattaattatttttcttttgccttatattttgcagggctttgtgaatatgagagagttaaatctagacaaatgtcagtatttaacacga |
28238576 |
T |
|
| Q |
373 |
atacacgacgtctccaatctcccaaatttagaaatattttcatttcaa |
420 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28238577 |
attcacgacgtctccaatctcccaaatttagaaatattttcatttcaa |
28238624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 28190504 - 28190638
Alignment:
| Q |
286 |
ttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtct |
385 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
28190504 |
ttaattccttttctttggcctgatattttgcagaggtttgtgaatatgagagagttaaatctagacaattgtcaatttttaacacggatacatgacgtct |
28190603 |
T |
|
| Q |
386 |
ccaatctcccaaatttagaaatattttcatttcaa |
420 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |
|
|
| T |
28190604 |
ccaacctctcaaatttagaaatattttcatttcaa |
28190638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 28245446 - 28245611
Alignment:
| Q |
264 |
tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt |
363 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||||||||||| | ||||||| | |
|
|
| T |
28245446 |
tataagaattctcattcattcattaattctttttcatttgccgtatattttgcagaggtttgggaatgtaagagagttaaatctagacgactgtcaatat |
28245545 |
T |
|
| Q |
364 |
ttaacacggatacacgacgtctccaatctcccaaatttagaaatattttcatttcaaggttgtaag |
429 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28245546 |
ttaacacggattcacgacgtctcgaatctcccaaatttagaaatattttcatttcaattttgtaag |
28245611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 28244783 - 28244970
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||| |||| | ||| | |||||||| |
|
|
| T |
28244783 |
gagatgaactgaagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtatt |
28244882 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttt |
196 |
Q |
| |
|
|||||||| |||||||||||||| | || |||| |||||| ||| |||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
28244883 |
ggaatggcctaaatatccttcaccggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgacttt |
28244970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 28141776 - 28141894
Alignment:
| Q |
311 |
ttttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaatatt |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | ||||| | ||||| | |||| | | ||||| | || ||| ||||||||||||||||| ||| |
|
|
| T |
28141776 |
ttttgcagaaatttgtgaatatgagagagttaattttagaccactgtcagtgcttaataagaatacataatgtatccggtctcccaaatttagaaacatt |
28141875 |
T |
|
| Q |
411 |
ttcatttcaaggttgtaag |
429 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
28141876 |
ttcatttcaatgttgtaag |
28141894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 56579 - 56181
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||| | ||| | |||||||| |
|
|
| T |
56579 |
gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaacatcttcctaacagtttgagagtatt |
56480 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||| |||||| ||||||||||| |||||| ||| |
|
|
| T |
56479 |
ggaatggcgtaaatatccttcacggttcgtaccatctgatattttcccgaagaaactttctatatgcaaactacagcaaagtgactttacatcattcgag |
56380 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattt-tttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctt |
307 |
Q |
| |
|
|| |||| ||||| |||| ||||| |||||| |||||||| || | ||| ||||| || | | || |||||| ||||||||||||||| |
|
|
| T |
56379 |
ttgcgtgggacaatcaagg--tatgtttaaatgcaatgatttcatttctctcatctta---------tcttataatcattaattatttttcttttgcctt |
56291 |
T |
|
| Q |
308 |
atattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaat |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
56290 |
atattttgcagaggtttgtgaatatgagagagttaaatctagacaaatgtcaatatttaacacggatacatgacatctccgatctcccaaatttagaaat |
56191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 36573 - 36824
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| | |||||||| |
|
|
| T |
36573 |
gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtatt |
36672 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgag |
208 |
Q |
| |
|
|||||||| ||||||||||||| || || |||| |||||| | | |||||| |||||||| ||||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
36673 |
ggaatggcctaaatatccttcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgag |
36772 |
T |
|
| Q |
209 |
ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtc |
262 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
36773 |
ttgcgtggcacagtgaagg--tatgtgtaaatgtaatgatttttttccctcgtc |
36824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 420
Target Start/End: Original strand, 38639 - 38786
Alignment:
| Q |
273 |
attcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacgg |
372 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
38639 |
attcgttcattaattaattatttttcttttgccttatattttgcagggctttgtgaatatgagagagttaaatctagacaaatgtcagtatttaacacga |
38738 |
T |
|
| Q |
373 |
atacacgacgtctccaatctcccaaatttagaaatattttcatttcaa |
420 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38739 |
attcacgacgtctccaatctcccaaatttagaaatattttcatttcaa |
38786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 45608 - 45773
Alignment:
| Q |
264 |
tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt |
363 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||||||||||| | ||||||| | |
|
|
| T |
45608 |
tataagaattctcattcattcattaattctttttcatttgccgtatattttgcagaggtttgggaatgtaagagagttaaatctagacgactgtcaatat |
45707 |
T |
|
| Q |
364 |
ttaacacggatacacgacgtctccaatctcccaaatttagaaatattttcatttcaaggttgtaag |
429 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45708 |
ttaacacggattcacgacgtctcgaatctcccaaatttagaaatattttcatttcaattttgtaag |
45773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 44945 - 45132
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt |
108 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||| |||| | ||| | |||||||| |
|
|
| T |
44945 |
gagatgaactgaagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtatt |
45044 |
T |
|
| Q |
109 |
ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttt |
196 |
Q |
| |
|
|||||||| |||||||||||||| | || |||| |||||| ||| |||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
45045 |
ggaatggcctaaatatccttcaccggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgacttt |
45132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 16693016 - 16693129
Alignment:
| Q |
18 |
tcaagaagatgcaaaaccttaaaatacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtattggaatggca |
117 |
Q |
| |
|
||||||||||| |||||| |||| ||||||| ||||||||||| |||||||||||| || ||| || |||| ||||| | ||||| | |||||||| |
|
|
| T |
16693016 |
tcaagaagatgataaacctcaaaacacttattattaagaatggtcacttttccaaaggaccaaaacatcttccaaatagtttaagagtgcttgaatggca |
16693115 |
T |
|
| Q |
118 |
taaatatccttcac |
131 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
16693116 |
tagatatccttcac |
16693129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 16693294 - 16693402
Alignment:
| Q |
310 |
attttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctccaatctcccaaatttagaaatat |
409 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||| ||| || | ||| ||||| || ||||||||||||||||| | |
|
|
| T |
16693294 |
attttgcagaagttcgtgaatatgagagagttaaatttagacaattgtaaatatttgacgcatatatttgacgtatcttgtctcccaaatttagaaaaaa |
16693393 |
T |
|
| Q |
410 |
tttcatttc |
418 |
Q |
| |
|
||||||||| |
|
|
| T |
16693394 |
tttcatttc |
16693402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 3281587 - 3281632
Alignment:
| Q |
9 |
gagatgaactcaagaagatgcaaaaccttaaaatacttattgttaa |
54 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
3281587 |
gagatgaattcaagaagatgaaaaacctcaaaacacttattgttaa |
3281632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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