View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15359_high_1 (Length: 573)
Name: NF15359_high_1
Description: NF15359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15359_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 166 - 554
Target Start/End: Original strand, 30665639 - 30666027
Alignment:
| Q |
166 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatacggt |
265 |
Q |
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| T |
30665639 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatacggt |
30665738 |
T |
|
| Q |
266 |
cttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcac |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30665739 |
cttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccggtgacaatgatgggcac |
30665838 |
T |
|
| Q |
366 |
acgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgaca |
465 |
Q |
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| T |
30665839 |
acgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgaca |
30665938 |
T |
|
| Q |
466 |
gtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatgatgtc |
554 |
Q |
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| T |
30665939 |
gtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatgtc |
30666027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 30665487 - 30665596
Alignment:
| Q |
2 |
tttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatctgcaacaataatag |
101 |
Q |
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| T |
30665487 |
tttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatctgcaacaataatag |
30665586 |
T |
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| Q |
102 |
ctcgtaaata |
111 |
Q |
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|||||||||| |
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| T |
30665587 |
ctcgtaaata |
30665596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 253 - 542
Target Start/End: Original strand, 34435088 - 34435376
Alignment:
| Q |
253 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtga |
352 |
Q |
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| T |
34435088 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
34435187 |
T |
|
| Q |
353 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
452 |
Q |
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| T |
34435188 |
caatgataggcacacgtgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
34435287 |
T |
|
| Q |
453 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttccctt |
542 |
Q |
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| T |
34435288 |
ttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacat-tttccctt |
34435376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 34434773 - 34434857
Alignment:
| Q |
5 |
ccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatctg |
89 |
Q |
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| T |
34434773 |
ccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcatatactcttgccctaagtgcaccaaagaaatctg |
34434857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 274 - 554
Target Start/End: Original strand, 6853480 - 6853760
Alignment:
| Q |
274 |
gtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcacacgagcgt |
373 |
Q |
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||||| |||||||||||||| |||||||| |||||||| || | ||||||||| | || ||||| ||||| || ||||| ||||| || || || || | |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
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| Q |
374 |
tatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattg |
473 |
Q |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
|
| Q |
474 |
tgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatgatgtc |
554 |
Q |
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|| || |||||||| | ||| ||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||| ||||| |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttctgataatgtc |
6853760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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