View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15359_high_2 (Length: 494)
Name: NF15359_high_2
Description: NF15359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15359_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 459
Target Start/End: Original strand, 6220693 - 6221145
Alignment:
| Q |
3 |
atagcaattagcaattgttggaatgaagtctcacatcacatatattgagtaaaatgagcaaaatcaaaatttatgaatgcataaccattccaattggtca |
102 |
Q |
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| T |
6220693 |
atagcaattagcaattgttggaatgaagtctcaca---catatattgagtaaaatgagcaaaatcaaaatttatgaatgcataactattccaattggtca |
6220789 |
T |
|
| Q |
103 |
agatctttttaaacaaaattggagtatctctagttaaagttaaggtgaaccagcctatactgtattctaatcctatcctaatcctaatgaaataatggtg |
202 |
Q |
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| T |
6220790 |
agatctttttaaacaaaattggagtatctctagttaaagttaaggtgaaccagcctatactgtattctaatcctatcctaatcctaatgatataatggta |
6220889 |
T |
|
| Q |
203 |
aattagtcaggtatactagtaatgaagacatgattagtcttccatgcatctttaatatgattctggttgtgagaaggtaacataacattcacacaaagat |
302 |
Q |
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| T |
6220890 |
aattagtcaggtatactagtaatgaagacatgattagacttccatgcatctttaatatgattctggttgtgagaaggtaacataacattcacacaaagat |
6220989 |
T |
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| Q |
303 |
taatgcacaccaattatgttcaagtggttaatgagttttacttaaaaataaattgttcggaagaactcaagttcgtttcttggatnnnnnnnctttttat |
402 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
6220990 |
taatgcacaccaattacgttcaagtgattaatgagttttacttaaaaataaattgttcggaagaactcgagttcgtttcttggataaaataactttttat |
6221089 |
T |
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| Q |
403 |
cagactttatttacctcacgtttaccgctgcattactggaatctttttcccctaaat |
459 |
Q |
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| T |
6221090 |
cagactttattta-ctcacgcttagcgctgctttactggaatctttttcccctaaat |
6221145 |
T |
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