View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_13 (Length: 434)
Name: NF15360_high_13
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 2631552 - 2631947
Alignment:
| Q |
16 |
atcgtgaagtcctactctacaagtaacaaatatggccccgttgcatttaagatgacattaaattcaacaagtggtcaaatttcaccatcatggtgccagt |
115 |
Q |
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| T |
2631552 |
atcgtgaagtccaactctacaagtaacaaatatggccccgttgcatttaagatgacattaaat-caacaagtggtcaaatttcaccatcatggtgccagt |
2631650 |
T |
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| Q |
116 |
gccatttttccacggcactatggtatggtaggtagaaccttatggtatgtatgtaccatcatatgcagatgaatgtcaaaaagaaaaagagatagagttg |
215 |
Q |
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| T |
2631651 |
gccatttttccacggcactatg-----gtaggtagaaccttatggtatgtatgtaccatcatatgcacatgaatgtcaaaaagaaaaagagatagagttg |
2631745 |
T |
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| Q |
216 |
ggacatgatctttaatttaaatcaagccaagccagatgtctatcttataagttagagttagcaatgccccaactagagataggacaacgactccattaac |
315 |
Q |
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| T |
2631746 |
ggacatgatctttaatttaaatcaagccaagccagatgtctatcttataagttagagttagcaatgccccaactagagataggacaacgactccattacc |
2631845 |
T |
|
| Q |
316 |
atcgatggtacgtatactcaatgtaacttcgatctatctattttatacgtacaatacaggtgtagtgcgagttgaaaaattaatatatttactactacta |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2631846 |
atcgatggtacgtatactcaatgtaacatcgatctatctattttatacgtacaatacaggtgtagtgcgatttgaaaaattaatatatttactactacta |
2631945 |
T |
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