View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_16 (Length: 399)
Name: NF15360_high_16
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 32145312 - 32145679
Alignment:
| Q |
19 |
attagtcgaatcagtggatcactaagattccaaaagagacaacacaaattgcagctctggataattcttgatgtgaagttgagtgggagtagatagagaa |
118 |
Q |
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| T |
32145312 |
attagtcgaaccagtggatcactaagattgcaaaagagacaacacaaattgcagctctggataattcttgatatgaagttgagtgggagtagatagagaa |
32145411 |
T |
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| Q |
119 |
tgcagtagagagtcaaaagatgctgaattattatagaataataatagtagccgcagttaaatagagctgaacaagaataatcacttgaaatgtataacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145412 |
tgcagtagagagtcaaaagatgctgaattattatagaataataatagtagccgcagttaaatagagctgaacaagaataatcacttgaaatgtataacaa |
32145511 |
T |
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| Q |
219 |
gacaaagacttgtcactgttgatgttgtttatcaatctgaaattttgcacctttgtatgtagacaaggaaaatgtgattgttggaacttggttttccatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145512 |
gacaaagacttgtcactgttgatgttgtttatcaatctgaaattctgcacctttgtatgtagacaaggaaaatgtgattgttggaacttggttttccatt |
32145611 |
T |
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| Q |
319 |
tgagggctcgaggatatatagtactgccaaaccaaagattgttttggaatttattctctcttcatctc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145612 |
tgagggctcgaggatatatagtactgccaaaccaaagattgttttggaatttattctctcttcatctc |
32145679 |
T |
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