View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15360_high_19 (Length: 374)

Name: NF15360_high_19
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15360_high_19
NF15360_high_19
[»] chr7 (1 HSPs)
chr7 (1-321)||(28860887-28861202)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 28860887 - 28861202
Alignment:
Q  1 tagctgtcaattagaataatttaggcatctcatgaaaattgaaattgatacattttaacttgtactcgatttttagagataaaatgaaacaacattgttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860887 tagctgtcaattagaataatttaggcatcacatgaaaattgaaattgatacattttaacttgtactcgatttttagagataaaatgaaacaacattgttg 28860986  T
Q  101 gtcgattttgatgaattatagccacagaaaaaataatgtgnnnnnnnnn-----agaacatgtgcttggttagaggcatccacatatcaaaattgcatca 195  Q
    ||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||          ||||||||||||||||    
T  28860987 gtcgattttgatgaattatagccacagaaaaaataatgtgttttttttttttttagaacatgtgcttggttaga----------tatcaaaattgcatca 28861076  T
Q  196 acatccttattggccatgatttcaagttcaatgtagaatccaaaaatgctttgacagcttccaagttgtctatattctgttgttcaccacaacaagttga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28861077 acatccttattggccatgatttcaagttcaatgtagaatccaaaaatgctttgacagcttccaagttgtctatattctgttgttcaccacaacaagttga 28861176  T
Q  296 aacgtgtccaatgtttcttttgttgg 321  Q
    ||||||||||||||||||||||||||    
T  28861177 aacgtgtccaatgtttcttttgttgg 28861202  T

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