View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_20 (Length: 367)
Name: NF15360_high_20
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 139 - 349
Target Start/End: Original strand, 40664257 - 40664451
Alignment:
| Q |
139 |
acaccttgtgacacttttgttccttgttttgccatatatggataaacagcttaattaaatgcacttaccatataagtggttttgtttaagtcaaaaatca |
238 |
Q |
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| T |
40664257 |
acaccttgtgacacttttgttccttgttttgccatatatggataaacagcttaattaaatgcacttaccatataagtggtttcgtttaagtcaaaaatca |
40664356 |
T |
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| Q |
239 |
aagaaagttatattgttttcatataagccattttcataagctattttaacaagtttatgatgaaaacaacgtacagacaatgtgatctacttgtttccat |
338 |
Q |
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| T |
40664357 |
aagaaagttatattg---------------ttttcataagctattttaacaagtttatgatgaaaacaacgtacagacaatgtgatctac-tgtttccat |
40664440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 40663983 - 40664091
Alignment:
| Q |
12 |
agcacagacatgttaggtcaatcatacagcctcgaaatctcagcagttagataaagatcataccactcttattttaacttcaccaaatcaacttccatgc |
111 |
Q |
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| T |
40663983 |
agcacaaacatgttaggtcaatcatacagcctcgaaatctcagcagttagataaagatcataccactcttattctaacttcaccaaatcaacttccatgc |
40664082 |
T |
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| Q |
112 |
aaatataat |
120 |
Q |
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| T |
40664083 |
aaatataat |
40664091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 34363988 - 34364020
Alignment:
| Q |
250 |
attgttttcatataagccattttcataagctat |
282 |
Q |
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| T |
34363988 |
attgttttcatataagctattttcataagctat |
34364020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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