View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_28 (Length: 305)
Name: NF15360_high_28
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40415992 - 40416279
Alignment:
| Q |
1 |
ttaagttcgaattctggttgaaacaatcttaattaaactttatttacctcccgagttctatattcactaaaatcccattccccttaaaaccggatggttt |
100 |
Q |
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| T |
40415992 |
ttaagtttgaattctggttgaaacaatcttaattaaactttatttacctcccgaattctatattcactaaaatcccattcccctgaaaaccggatggttt |
40416091 |
T |
|
| Q |
101 |
agataagtggttcttttgttctcgnnnnnnnnnnnnnnnnnnnnnnngcgtaaaaaacaatgtaaagactatggcagtcactaacaagttcatttgaatt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40416092 |
agataagtggttcttttgttctcgttttttgatatattttttcttttgcgtaaaaaacaatgtaaagactatggcagtcactaaccagttcatttgaatt |
40416191 |
T |
|
| Q |
201 |
gggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttattgaagccacattgtct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40416192 |
gggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttattgcagccacattgtct |
40416279 |
T |
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