View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_34 (Length: 246)
Name: NF15360_high_34
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41969161 - 41968943
Alignment:
| Q |
1 |
ttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttatggatgctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
41969161 |
ttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttaccggtgctgc |
41969062 |
T |
|
| Q |
101 |
caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41969061 |
caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttctt-----------cttttccaatgtaacaatactc |
41968973 |
T |
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| Q |
201 |
aagcatggaaccacaaattcataaacttaa |
230 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
41968972 |
aagcatggaaccacgaattcataaacttaa |
41968943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 3722450 - 3722575
Alignment:
| Q |
101 |
caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| |
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| T |
3722450 |
caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccg |
3722549 |
T |
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| Q |
201 |
aagcatggaaccacaaattcataaac |
226 |
Q |
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| T |
3722550 |
aattatggaaccactaattcataaac |
3722575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 32953742 - 32953627
Alignment:
| Q |
111 |
cacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaa |
210 |
Q |
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|||||||||| |||||| |||||| |||||||| |||||||||| || ||||| | |||||| |||| |||| |||||| |||||| | || || | || |
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| T |
32953742 |
cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa |
32953643 |
T |
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| Q |
211 |
ccacaaattcataaac |
226 |
Q |
| |
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| || ||||||||||| |
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| T |
32953642 |
caacgaattcataaac |
32953627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 7805573 - 7805691
Alignment:
| Q |
108 |
ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatg |
207 |
Q |
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|
|||||||||||||||||||| || ||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| || ||||| ||||| | |
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| T |
7805573 |
ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaag |
7805672 |
T |
|
| Q |
208 |
gaaccacaaattcataaac |
226 |
Q |
| |
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||| || ||||||||||| |
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| T |
7805673 |
caactacgaattcataaac |
7805691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1236203 - 1236150
Alignment:
| Q |
14 |
tttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagg |
67 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
1236203 |
tttttcctttaaacatgtgaatcacaagtataatatttattaacttgatgaagg |
1236150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 35739771 - 35739711
Alignment:
| Q |
166 |
ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaac |
226 |
Q |
| |
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|||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
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| T |
35739771 |
ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaac |
35739711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 37080806 - 37080857
Alignment:
| Q |
175 |
acttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaac |
226 |
Q |
| |
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|||||||||||| ||| |||||||| ||||| | |||||||||||||||||| |
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| T |
37080806 |
acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaac |
37080857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 36033789 - 36033701
Alignment:
| Q |
138 |
ctcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaac |
226 |
Q |
| |
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|||||| |||||||||| || ||||||| ||| |||||||||||| |||||| ||| |||| ||||| | |||||| ||||||||||| |
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| T |
36033789 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaac |
36033701 |
T |
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