View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_high_6 (Length: 549)
Name: NF15360_high_6
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 16 - 539
Target Start/End: Original strand, 45514958 - 45515490
Alignment:
| Q |
16 |
gaaggaatgacattgggaaaatcaacatcatcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttctta |
115 |
Q |
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| T |
45514958 |
gaaggaatgacattgggaaaatcaacatcatcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttctta |
45515057 |
T |
|
| Q |
116 |
cagatgtcaatgcattacctcctagtactccggttgattggcctagtcaatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatatt |
215 |
Q |
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| T |
45515058 |
cagatgtcaatgcattacctcctagtactccggttgattggcctagtcaatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatatt |
45515157 |
T |
|
| Q |
216 |
ggagcttgtggtcaacatggacttgtcacaaaacaatttggttggattcattccaaatgaaa---------tcacagggctgcatggcttgaacttgtca |
306 |
Q |
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| T |
45515158 |
ggagcttgtggtcaacatggacttgtcacaaaacaatttggttggattcattccaaatgaaatcacatggctcacaggactgcatggcttgaacttgtca |
45515257 |
T |
|
| Q |
307 |
agaaatcatttgaaaggagagattcctcaattgatgggacgcatgaaatcactagaatccttggacctgtctcataaccaactttcaggcacaattccca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515258 |
agaaatcatttgaaaggagagattcctcaattgatgggacgcatgaaatcactagaatccttggacctgtctcataaccaactttcaggcacaattccca |
45515357 |
T |
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| Q |
407 |
gtaccatgtctgctttaacttcattgagtcatttgaacttgtcgtacaataacctttcaggatcaattcccaaagataatcagtttttaactttggatga |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515358 |
gtaccatgtctgctttaacttcattgagtcatttgaacttgtcgtacaataacctttcaggatcaattcccaaagataatcagtttttaactttggatga |
45515457 |
T |
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| Q |
507 |
cccgtatatttatgccaacaatccatacctttg |
539 |
Q |
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| T |
45515458 |
cccgtatatttatgccaacaatccatacctttg |
45515490 |
T |
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