View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15360_low_1 (Length: 835)

Name: NF15360_low_1
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15360_low_1
NF15360_low_1
[»] scaffold0781 (2 HSPs)
scaffold0781 (14-452)||(5582-6018)
scaffold0781 (559-779)||(5256-5474)
[»] chr6 (15 HSPs)
chr6 (14-452)||(2217126-2217562)
chr6 (559-779)||(2216799-2217018)
chr6 (653-779)||(24798843-24798968)
chr6 (671-783)||(24798643-24798755)
chr6 (657-821)||(11643754-11643919)
chr6 (647-783)||(18494949-18495084)
chr6 (653-783)||(18494735-18494862)
chr6 (653-772)||(11643977-11644094)
chr6 (653-747)||(24690356-24690449)
chr6 (654-739)||(24690607-24690691)
chr6 (666-779)||(9954820-9954933)
chr6 (669-779)||(9955590-9955700)
chr6 (719-772)||(11643898-11643951)
chr6 (718-770)||(24798770-24798822)
chr6 (719-772)||(24690504-24690557)
[»] chr1 (16 HSPs)
chr1 (654-783)||(37189565-37189693)
chr1 (653-783)||(10824586-10824715)
chr1 (654-783)||(18844461-18844589)
chr1 (653-821)||(22683142-22683311)
chr1 (653-783)||(19056151-19056280)
chr1 (653-783)||(19056368-19056497)
chr1 (653-778)||(37189369-37189492)
chr1 (653-783)||(15825738-15825865)
chr1 (653-771)||(18844677-18844795)
chr1 (671-781)||(10824386-10824496)
chr1 (696-783)||(22683358-22683445)
chr1 (719-771)||(22683290-22683342)
chr1 (719-772)||(10824514-10824567)
chr1 (719-772)||(19056295-19056348)
chr1 (719-769)||(18844608-18844658)
chr1 (719-765)||(37189495-37189541)
[»] chr8 (20 HSPs)
chr8 (653-783)||(13884490-13884619)
chr8 (653-782)||(13884706-13884834)
chr8 (653-783)||(42126383-42126512)
chr8 (661-783)||(2554067-2554188)
chr8 (653-783)||(29714543-29714672)
chr8 (653-783)||(29714759-29714888)
chr8 (653-783)||(11867899-11868027)
chr8 (653-783)||(42126601-42126730)
chr8 (699-781)||(14996678-14996761)
chr8 (42-161)||(22798322-22798441)
chr8 (669-779)||(26745279-26745389)
chr8 (675-750)||(43416285-43416360)
chr8 (722-772)||(2554002-2554052)
chr8 (669-779)||(26745959-26746069)
chr8 (719-772)||(14996608-14996661)
chr8 (719-772)||(29714691-29714744)
chr8 (696-783)||(15862541-15862628)
chr8 (719-772)||(42126532-42126585)
chr8 (719-769)||(13884638-13884688)
chr8 (792-821)||(14996600-14996629)
[»] chr2 (22 HSPs)
chr2 (653-821)||(16973065-16973234)
chr2 (653-819)||(2916379-2916545)
chr2 (654-783)||(44594455-44594583)
chr2 (670-783)||(38982774-38982887)
chr2 (653-783)||(16973281-16973410)
chr2 (671-783)||(40987675-40987787)
chr2 (653-771)||(44594249-44594367)
chr2 (653-771)||(38982558-38982675)
chr2 (674-783)||(2916594-2916703)
chr2 (653-771)||(11533673-11533791)
chr2 (678-783)||(24126146-24126245)
chr2 (653-783)||(13559519-13559647)
chr2 (678-783)||(24125876-24125975)
chr2 (658-783)||(40987863-40987987)
chr2 (719-772)||(16973213-16973266)
chr2 (671-720)||(24125688-24125737)
chr2 (719-772)||(44594383-44594436)
chr2 (701-783)||(13559352-13559434)
chr2 (719-772)||(38982702-38982755)
chr2 (719-772)||(2916526-2916579)
chr2 (719-772)||(24125804-24125857)
chr2 (669-726)||(34826709-34826766)
[»] scaffold0060 (1 HSPs)
scaffold0060 (653-783)||(22922-23051)
[»] chr4 (14 HSPs)
chr4 (653-783)||(39161289-39161418)
chr4 (653-771)||(50509357-50509474)
chr4 (674-783)||(39161504-39161613)
chr4 (653-783)||(55173470-55173599)
chr4 (42-156)||(1293533-1293647)
chr4 (653-783)||(47096801-47096928)
chr4 (674-772)||(55173355-55173454)
chr4 (655-783)||(37996068-37996195)
chr4 (653-783)||(47097017-47097143)
chr4 (669-779)||(9738134-9738243)
chr4 (719-772)||(47096947-47097001)
chr4 (669-745)||(9738937-9739013)
chr4 (719-771)||(39161436-39161488)
chr4 (653-702)||(2623449-2623497)
[»] chr7 (17 HSPs)
chr7 (655-783)||(28715645-28715772)
chr7 (653-783)||(28715859-28715988)
chr7 (671-765)||(30862236-30862330)
chr7 (653-783)||(41985911-41986040)
chr7 (652-783)||(6474280-6474411)
chr7 (653-783)||(6474498-6474626)
chr7 (671-783)||(47373679-47373791)
chr7 (653-783)||(47373463-47373594)
chr7 (671-783)||(30862437-30862549)
chr7 (669-779)||(38408121-38408231)
chr7 (669-779)||(6271188-6271298)
chr7 (653-725)||(41986183-41986254)
chr7 (669-779)||(6270235-6270345)
chr7 (669-779)||(38407448-38407558)
chr7 (653-707)||(22226665-22226718)
chr7 (719-769)||(41986058-41986108)
chr7 (719-772)||(47373612-47373665)
[»] chr3 (13 HSPs)
chr3 (654-783)||(46003465-46003593)
chr3 (653-821)||(51663251-51663420)
chr3 (653-783)||(40244626-40244756)
chr3 (653-783)||(51663467-51663596)
chr3 (671-783)||(20537944-20538056)
chr3 (655-783)||(46003251-46003378)
chr3 (653-783)||(20538151-20538280)
chr3 (655-764)||(40364194-40364301)
chr3 (672-783)||(40364060-40364171)
chr3 (719-772)||(46003393-46003446)
chr3 (653-715)||(40244873-40244934)
chr3 (719-765)||(20538076-20538122)
chr3 (719-772)||(51663399-51663452)
[»] chr5 (4 HSPs)
chr5 (653-783)||(21249363-21249492)
chr5 (719-769)||(21249511-21249561)
chr5 (737-783)||(21249579-21249625)
chr5 (654-704)||(21249629-21249678)
[»] scaffold0034 (1 HSPs)
scaffold0034 (705-769)||(108047-108111)
[»] scaffold0036 (2 HSPs)
scaffold0036 (671-779)||(61042-61150)
scaffold0036 (671-779)||(60778-60886)


Alignment Details
Target: scaffold0781 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Complemental strand, 6018 - 5582
Alignment:
Q  14 atcatgtacaacattcaaaaactttttgtagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaa 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6018 atcatgtacaacattcaaaaactttttctagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactagaaggaa 5919  T
Q  114 acatggtgttttgttgaaatcttccgtaacaatttattctaaagaaatggagaggatctgcaccccccattaactaccttgagaatcatgtcatgatacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5918 acatggtgttttgttgaaatcttccgtaacaatttattctaaggaaatggagaggatctgcaccccccattaactacctcgagaatcatgtcatgatacc 5819  T
Q  214 taaagagaacaannnnnnnatcggttagatcattggaggtgagatattatggtggtatatatatatccacttcaccacgagggttatagtgcacgttagt 313  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5818 taaagagaacaatttttttatcggttagatcattggaggtgagatattatggtgg--tatatatatccacttcaccacgagggttatagtgcacgttagt 5721  T
Q  314 ttcgtgctatttgaaaaataaaatgtt-gacaaaataaaatcatgaaatcaatgatatagacgttgaaattttgagtggtgagggcaacatatatattat 412  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5720 ttcgtgctatttgaaaaataaaatgttcgacaaagtaaaatcatgaaatcaatgatatagac-ttgaaattttgagtggtgagggcaacatatatattat 5622  T
Q  413 ttaatattattacaaggacatgctcatacatgcacacatt 452  Q
    || ||||||||||||| |||||||||||||| ||||||||    
T  5621 ttcatattattacaagcacatgctcatacatacacacatt 5582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 559 - 779
Target Start/End: Complemental strand, 5474 - 5256
Alignment:
Q  559 attcttttacaaataattttatagtatattacaatttgggtatgagaagtgtggctagaagtatctttcgctatgtgttgtctttttatattttgcttat 658  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  5474 attcttttacaa-taattttatagtatattacaattttggtatgagaagtgtggctagaagtgtcttttgctatgtgttgtctttttatatttggcttat 5376  T
Q  659 tcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 758  Q
    ||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5375 tcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagt 5277  T
Q  759 tttagtcctttctggtagttt 779  Q
    ||||||| ||| || ||||||    
T  5276 tttagtcatttatgttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Complemental strand, 2217562 - 2217126
Alignment:
Q  14 atcatgtacaacattcaaaaactttttgtagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaa 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2217562 atcatgtacaacattcaaaaactttttctagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactagaaggaa 2217463  T
Q  114 acatggtgttttgttgaaatcttccgtaacaatttattctaaagaaatggagaggatctgcaccccccattaactaccttgagaatcatgtcatgatacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2217462 acatggtgttttgttgaaatcttccgtaacaatttattctaaggaaatggagaggatctgcaccccccattaactacctcgagaatcatgtcatgatacc 2217363  T
Q  214 taaagagaacaannnnnnnatcggttagatcattggaggtgagatattatggtggtatatatatatccacttcaccacgagggttatagtgcacgttagt 313  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  2217362 taaagagaacaatttttttatcggttagatcattggaggtgagatattatggtgg--tatatatatccacttcaccacgagggttatagtgcacgttagt 2217265  T
Q  314 ttcgtgctatttgaaaaataaaatgtt-gacaaaataaaatcatgaaatcaatgatatagacgttgaaattttgagtggtgagggcaacatatatattat 412  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2217264 ttcgtgctatttgaaaaataaaatgttcgacaaagtaaaatcatgaaatcaatgatatagac-ttgaaattttgagtggtgagggcaacatatatattat 2217166  T
Q  413 ttaatattattacaaggacatgctcatacatgcacacatt 452  Q
    || ||||||||||||| |||||||||||||| ||||||||    
T  2217165 ttcatattattacaagcacatgctcatacatacacacatt 2217126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 559 - 779
Target Start/End: Complemental strand, 2217018 - 2216799
Alignment:
Q  559 attcttttacaaataattttatagtatattacaatttgggtatgagaagtgtggctagaagtatctttcgctatgtgttgtctttttatattttgcttat 658  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  2217018 attcttttacaaataattttatagtatattacaattttggtatgagaagtgtggctagaagtgtcttttgctatgtgttgtctttttatatttggcttat 2216919  T
Q  659 tcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 758  Q
    ||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2216918 tcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagt 2216820  T
Q  759 tttagtcctttctggtagttt 779  Q
    ||||||| ||| || ||||||    
T  2216819 tttagtcatttatgttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 653 - 779
Target Start/End: Complemental strand, 24798968 - 24798843
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24798968 gcttattcaatcacccga-tcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 24798870  T
Q  753 actagttttagtcctttctggtagttt 779  Q
    ||||||||||||||||||| |||||||    
T  24798869 actagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 671 - 783
Target Start/End: Original strand, 24798643 - 24798755
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    ||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  24798643 gtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcatttc 24798742  T
Q  771 tggtagtttctct 783  Q
    || ||||||||||    
T  24798743 tgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 657 - 821
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  657 attcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttacta 756  Q
    ||||||||||| | ||||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||| || |||||||    
T  11643754 attcaatcacccg-gtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttacta 11643852  T
Q  757 gttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 821  Q
    ||||||||||| |||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  11643853 gttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 647 - 783
Target Start/End: Complemental strand, 18495084 - 18494949
Alignment:
Q  647 tattttgcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgc 746  Q
    ||||| ||||||||||||| || ||||||||||||||||||||| | |||||||| |||| ||||||||||||||| |||||||||||||||| |||||     
T  18495084 tatttggcttattcaatcatct-agtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttga 18494986  T
Q  747 ttcgttactagttttagtcctttctggtagtttctct 783  Q
    | ||||| |||||||||| ||||||| ||||||||||    
T  18494985 tccgttattagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 18494735 - 18494862
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |||    
T  18494735 gcttattcaatcacatg-gtcccttaactttattgattgtctcaatttggtccc-tagctataatttgtaccattttggtcccctatg-tttgctttgtt 18494831  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||| || ||||||||||    
T  18494832 actagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 653 - 772
Target Start/End: Complemental strand, 11644094 - 11643977
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggt-cccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 751  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| ||    
T  11644094 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctttgt 11643998  T
Q  752 tactagttttagtcctttctg 772  Q
    |||||||||||||| ||||||    
T  11643997 tactagttttagtcttttctg 11643977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 653 - 747
Target Start/End: Original strand, 24690356 - 24690449
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgct 747  Q
    ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  24690356 gcttattcaatcacccg-gtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 654 - 739
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctat 739  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccga-tcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 666 - 779
Target Start/End: Original strand, 9954820 - 9954933
Alignment:
Q  666 cctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 765  Q
    |||||||||||||||||||||| ||||   || |||||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  |||    
T  9954820 cctgagtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtc 9954919  T
Q  766 ctttctggtagttt 779  Q
    |||| || ||||||    
T  9954920 ctttatgttagttt 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 669 - 779
Target Start/End: Complemental strand, 9955700 - 9955590
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||| |||| | || |||||||||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  ||||||    
T  9955700 gagtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctt 9955601  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  9955600 tctgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 11643898 - 11643951
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctg 11643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 718 - 770
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  718 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||| |||||||||||||   ||| ||||||||||||||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 5e-55; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 654 - 783
Target Start/End: Complemental strand, 37189693 - 37189565
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 753  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37189693 cttattcaatcacctg-gtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgtta 37189595  T
Q  754 ctagttttagtcctttctggtagtttctct 783  Q
    |||||||||||| |||||||||||||||||    
T  37189594 ctagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 10824715 - 10824586
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10824715 gcttattcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 10824617  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||||| |||||||||||    
T  10824616 actagttttagtcctttctagtagtttctct 10824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 654 - 783
Target Start/End: Original strand, 18844461 - 18844589
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 753  Q
    ||||||||| ||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18844461 cttattcaaccacatg-gtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtta 18844559  T
Q  754 ctagttttagtcctttctggtagtttctct 783  Q
    |||||||||||| |||||||||||||||||    
T  18844560 ctagttttagtcatttctggtagtttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 653 - 821
Target Start/End: Original strand, 22683142 - 22683311
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| |  ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  22683142 gcttattcaatcacccgc-tcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 22683240  T
Q  753 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 821  Q
    |||||||||||||||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  22683241 actagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 19056151 - 19056280
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056151 gcttattcaatcacctga-tcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| |||||| ||||||||||    
T  19056250 actagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 19056497 - 19056368
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||| |||    
T  19056497 gcttattcaatcatccg-gtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgtt 19056399  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| ||||||  |||||||||    
T  19056398 actagttttagtcatttctgtcagtttctct 19056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 653 - 778
Target Start/End: Original strand, 37189369 - 37189492
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189369 gcttattcaatcacccg-gtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  753 actagttttagtcctttctggtagtt 778  Q
    |||||||||||||||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 15825865 - 15825738
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||    
T  15825865 gcttattcaatcacccg-gtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgtt 15825769  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    | ||||||||||||||| |  ||||||||||    
T  15825768 attagttttagtcctttttattagtttctct 15825738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 653 - 771
Target Start/End: Complemental strand, 18844795 - 18844677
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 751  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||| |||||||||||| |||    
T  18844795 gcttattcaatcacccga-tcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgt 18844697  T
Q  752 tactagttttagtcctttct 771  Q
    ||||||||||||| ||||||    
T  18844696 tactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 671 - 781
Target Start/End: Original strand, 10824386 - 10824496
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    |||| ||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10824386 gtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttc 10824485  T
Q  771 tggtagtttct 781  Q
    || ||||||||    
T  10824486 tgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 696 - 783
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  696 aatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 719 - 771
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 771  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 19056348 - 19056295
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctg 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 719 - 769
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 765
Target Start/End: Complemental strand, 37189541 - 37189495
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 765  Q
    |||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagtc 37189495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 13884490 - 13884619
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13884490 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgtt 13884588  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| |||||||||||||||||    
T  13884589 actagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 653 - 782
Target Start/End: Complemental strand, 13884834 - 13884706
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884834 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  753 actagttttagtcctttctggtagtttctc 782  Q
    ||| ||||||||||||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 42126383 - 42126512
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||| ||||||| |||||| | | |||||||||||||||| |||||||| |||||||||||||||||| |    
T  42126383 gcttattcaatcacccg-gtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcgct 42126481  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    |||||||||||||||||||||||||||||||    
T  42126482 actagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 661 - 783
Target Start/End: Complemental strand, 2554188 - 2554067
Alignment:
Q  661 aatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 760  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||    
T  2554188 aatcacct-agtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttt 2554090  T
Q  761 tagtcctttctggtagtttctct 783  Q
    |||| ||||||| ||||||||||    
T  2554089 tagttctttctgttagtttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 29714543 - 29714672
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||    
T  29714543 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgtt 29714641  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||| |||| || |||||| ||||||||||    
T  29714642 actagctttaatcatttctgttagtttctct 29714672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 29714888 - 29714759
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||  |||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714888 gcttatttgatcacctg-gtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| ||| ||  |||||||||    
T  29714789 actagttttagtcatttatgtcagtttctct 29714759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 11868027 - 11867899
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||| |||||||||| || ||     
T  11868027 gcttattcaatcacctg-gtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttgtc 11867930  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||| || ||||||||||    
T  11867929 actagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 42126730 - 42126601
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126730 gcttattcaatcacccg-gtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    |||| |||||||| |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 699 - 781
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  699 ttggtcccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctggtagtttct 781  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 22798322 - 22798441
Alignment:
Q  42 tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta 141  Q
    |||||||| ||||  || |||||| ||| ||||| |||||||||||||| |||||||| |||| || ||||||||||||||||||  |||||||||| ||    
T  22798322 tagtttatctctaatttgctaatctctaatttgtcacattgcagttattcgtggagaagttacaagaaggaaacatggtgttttgacgaaatcttccata 22798421  T
Q  142 acaatttattctaaagaaat 161  Q
    ||| ||||||||||| ||||    
T  22798422 acagtttattctaaaaaaat 22798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 669 - 779
Target Start/End: Original strand, 26745279 - 26745389
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  ||||||    
T  26745279 gagtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 26745378  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  26745379 tctgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 750
Target Start/End: Original strand, 43416285 - 43416360
Alignment:
Q  675 cttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 750  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416285 cttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 722 - 772
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  722 accaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 669 - 779
Target Start/End: Complemental strand, 26746069 - 26745959
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||| ||| |||| | || |||||||||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  ||||||    
T  26746069 gagtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctt 26745970  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  26745969 tctgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 14996608 - 14996661
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttctg 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 696 - 783
Target Start/End: Complemental strand, 15862628 - 15862541
Alignment:
Q  696 aatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 783  Q
    |||||| ||||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   ||||||||||    
T  15862628 aatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctct 15862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 42126532 - 42126585
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||| ||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagtcttttctg 42126585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 769
Target Start/End: Original strand, 13884638 - 13884688
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    |||||||||||| || | ||||||||||| |||| ||||||||||||||||    
T  13884638 tgtaccaatttgatctcttatgttttgctccgttcctagttttagtccttt 13884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 821
Target Start/End: Original strand, 14996600 - 14996629
Alignment:
Q  792 ttaacttatgtactaatttggtcccctatg 821  Q
    ||||||||||||||||||||||||||||||    
T  14996600 ttaacttatgtactaatttggtcccctatg 14996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 653 - 821
Target Start/End: Original strand, 16973065 - 16973234
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973065 gcttattcaatcacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  753 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 821  Q
    |||||||||| | ||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 653 - 819
Target Start/End: Original strand, 2916379 - 2916545
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| || || |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2916379 gcttattcaatcacccga-tctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2916477  T
Q  753 actagttttagtcctttctggtagtttctct-nnnnnnnnttaacttatgtactaatttggtccccta 819  Q
    |||||||||| ||||||||| ||||||||||         ||||||||||||| ||||||||||||||    
T  2916478 actagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 654 - 783
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 753  Q
    |||||||||||||| | |||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  44594583 cttattcaatcacccg-gtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgtta 44594485  T
Q  754 ctagttttagtcctttctggtagtttctct 783  Q
    |||||||||||| |||||||||||||||||    
T  44594484 ctagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 670 - 783
Target Start/End: Complemental strand, 38982887 - 38982774
Alignment:
Q  670 agtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| |||    
T  38982887 agtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcattt 38982788  T
Q  770 ctggtagtttctct 783  Q
    ||||||||||||||    
T  38982787 ctggtagtttctct 38982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 16973410 - 16973281
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| |||||||||||| | ||    
T  16973410 gcttattcaatcacatg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccatt 16973312  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| ||||||  |||||||||    
T  16973311 actagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 671 - 783
Target Start/End: Original strand, 40987675 - 40987787
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| | ||||||||| || |||||||||||||||| |||     
T  40987675 gtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttactagttttagtctttta 40987774  T
Q  771 tggtagtttctct 783  Q
    || ||||||||||    
T  40987775 tgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 653 - 771
Target Start/End: Original strand, 44594249 - 44594367
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 751  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  44594249 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgt 44594347  T
Q  752 tactagttttagtcctttct 771  Q
    ||||||||||||| ||||||    
T  44594348 tactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 653 - 771
Target Start/End: Original strand, 38982558 - 38982675
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||| ||||||||| || ||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||   ||||||||||||||||    
T  38982558 gcttaatcaatcacccga-tcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  753 actagttttagtcctttct 771  Q
     ||||||||||||||||||    
T  38982657 gctagttttagtcctttct 38982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 674 - 783
Target Start/End: Complemental strand, 2916703 - 2916594
Alignment:
Q  674 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctgg 773  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||| |||| |||||||  |||||||||||| ||||||||||     
T  2916703 ccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgt 2916604  T
Q  774 tagtttctct 783  Q
    ||||||||||    
T  2916603 tagtttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 653 - 771
Target Start/End: Complemental strand, 11533791 - 11533673
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgt 751  Q
    ||||||||||||| | | ||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |    
T  11533791 gcttattcaatcatcag-gtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttat 11533693  T
Q  752 tactagttttagtcctttct 771  Q
    |||||||||||||| |||||    
T  11533692 tactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 678 - 783
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  678 aacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 777  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 13559647 - 13559519
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| | | |||||||||||||||||||||| | |||||||| |||||||||||||||||| ||| |||||||| | || ||||||  |||    
T  13559647 gcttattcaatcatccg-gtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgtt 13559550  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||| ||||||| ||| || ||||||||||    
T  13559549 actagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 678 - 783
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  678 aacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 777  Q
    ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 658 - 783
Target Start/End: Complemental strand, 40987987 - 40987863
Alignment:
Q  658 ttcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 757  Q
    |||||||||| | ||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||  ||||||||||||||| |||||||   || |||     
T  40987987 ttcaatcacccg-gtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaa 40987889  T
Q  758 ttttagtcctttctggtagtttctct 783  Q
    |||||||| |||||| ||||||||||    
T  40987888 ttttagtcatttctgttagtttctct 40987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 671 - 720
Target Start/End: Original strand, 24125688 - 24125737
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttg 720  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  24125688 gtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 701 - 783
Target Start/End: Original strand, 13559352 - 13559434
Alignment:
Q  701 ggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 783  Q
    |||| ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||| |||||| ||||||||||    
T  13559352 ggtctcctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 2916526 - 2916579
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||| ||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagtcttttctg 2916579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 24125857 - 24125804
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagtcatttctg 24125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 726
Target Start/End: Complemental strand, 34826766 - 34826709
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaa 726  Q
    ||||||||||||||||||| |||| | || |||||||| ||| | |||||||||||||    
T  34826766 gagtcccttaacttaattgtttgtatcaaattggtcccgtaaatttaatttgtaccaa 34826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 23051 - 22922
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  23051 gcttattcaatcacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgtt 22953  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    |||||||||||||||||||| ||||||||||    
T  22952 actagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 39161289 - 39161418
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161289 gcttattcaatcacccga-tcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 39161387  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||||||  |||||||||    
T  39161388 actagttttagtcctttctgaaagtttctct 39161418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 653 - 771
Target Start/End: Complemental strand, 50509474 - 50509357
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50509474 gcttattcaatcatctga-tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 50509376  T
Q  753 actagttttagtcctttct 771  Q
    |||| |||||||| |||||    
T  50509375 actaattttagtcttttct 50509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 674 - 783
Target Start/End: Complemental strand, 39161613 - 39161504
Alignment:
Q  674 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctgg 773  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||     
T  39161613 ccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttattagttttagtcctttctgt 39161514  T
Q  774 tagtttctct 783  Q
    ||||||||||    
T  39161513 tagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 55173599 - 55173470
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||    
T  55173599 gcttattcaatcacccg-gtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgctttgtt 55173501  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||| ||||||||| ||| || ||||||||||    
T  55173500 acttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 1293647 - 1293533
Alignment:
Q  42 tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta 141  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||  | ||||||| |||||||||| |||||| |||| ||    
T  1293647 tagtttatttctagatttctaattgctagtttgttacattgcagttatttgtggagaaattacacgaaggaaacgtggtgttttgatgaaattttccata 1293548  T
Q  142 acaatttattctaaa 156  Q
    |||||||||||||||    
T  1293547 acaatttattctaaa 1293533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 47096801 - 47096928
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  47096801 gcttattcaatcacctga-tcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaatttgc-cccctatgttttgcttcgtt 47096897  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||| ||||||||||||| || | ||||||||    
T  47096898 acttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 674 - 772
Target Start/End: Original strand, 55173355 - 55173454
Alignment:
Q  674 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  55173355 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgttactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 655 - 783
Target Start/End: Original strand, 37996068 - 37996195
Alignment:
Q  655 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 754  Q
    |||||||||||||||| |||||||| | || ||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||     
T  37996068 ttattcaatcacctga-tcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttat 37996166  T
Q  755 tagttttagtcctttctggtagtttctct 783  Q
    ||||||||||| ||| |  ||||||||||    
T  37996167 tagttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 47097143 - 47097017
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| | || || |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |   |||||||||||  ||||    
T  47097143 gcttattcaatcatccga-tctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccgtt 47097048  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| ||| || ||||||||||    
T  47097047 actagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 779
Target Start/End: Original strand, 9738134 - 9738243
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||| ||||   || |||||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||    
T  9738134 gagtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac-agtttcggtcctt 9738232  T
Q  769 tctggtagttt 779  Q
    | || ||||||    
T  9738233 tttgttagttt 9738243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  719 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 669 - 745
Target Start/End: Complemental strand, 9739013 - 9738937
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttg 745  Q
    |||||||||||||| |||| |||| | || |||||||||||| ||||||||||||||| || |||| ||| ||||||    
T  9739013 gagtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttg 9738937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 719 - 771
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 771  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 702
Target Start/End: Complemental strand, 2623497 - 2623449
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttgg 702  Q
    ||||||||||||||  | |||||||||||||||||||||||| |||||||    
T  2623497 gcttattcaatcactcg-gtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 655 - 783
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  655 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 754  Q
    ||||||||||||| | |||||||||||||||| ||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28715645 ttattcaatcacccg-gtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 28715743  T
Q  755 tagttttagtcctttctggtagtttctct 783  Q
    |||||||||||||||||||||||||||||    
T  28715744 tagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 28715988 - 28715859
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  28715988 gcttattcaattacccg-gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcagtc 28715890  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| |||||| ||||||||||    
T  28715889 actagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 671 - 765
Target Start/End: Original strand, 30862236 - 30862330
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 765  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  30862236 gtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttgttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 41985911 - 41986040
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||| |||||||||||| |||    
T  41985911 gcttattcaatcaccc-agtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgtt 41986009  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    |||| ||||||||||||| | ||||||||||    
T  41986010 actaattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 652 - 783
Target Start/End: Original strand, 6474280 - 6474411
Alignment:
Q  652 tgcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatg-ttttgcttcg 750  Q
    |||||||||||| ||| || ||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||| |||||||| |    
T  6474280 tgcttattcaattaccgga-tcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttg 6474378  T
Q  751 ttactagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||| |||||| ||||||||||    
T  6474379 ttactagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 6474626 - 6474498
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||| |||| ||||||  |||    
T  6474626 gcttattcaatcacccga-tcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctgtt 6474529  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||| || ||||||||||    
T  6474528 actagttttagtcctttatgttagtttctct 6474498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 671 - 783
Target Start/End: Complemental strand, 47373791 - 47373679
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| ||||||     
T  47373791 gtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttta 47373692  T
Q  771 tggtagtttctct 783  Q
    || ||||||||||    
T  47373691 tgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 47373463 - 47373594
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 750  Q
    ||||||||||||||  || || |||||||||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373463 gcttattcaatcactcga-tctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  751 ttactagttttagtcctttctggtagtttctct 783  Q
    || |||||||||||| ||| || ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctct 47373594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 671 - 783
Target Start/End: Complemental strand, 30862549 - 30862437
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    ||||||||| | |||||||||| | ||||| || |||||||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||| ||||    
T  30862549 gtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttc 30862450  T
Q  771 tggtagtttctct 783  Q
    || ||||||||||    
T  30862449 tgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 669 - 779
Target Start/End: Complemental strand, 38408231 - 38408121
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||| |||| | || |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  ||||||    
T  38408231 gagtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 38408132  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  38408131 tctgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 669 - 779
Target Start/End: Complemental strand, 6271298 - 6271188
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||| || |   || |||||||||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  ||||||    
T  6271298 gagtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctt 6271199  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  6271198 tctgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 725
Target Start/End: Complemental strand, 41986254 - 41986183
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtacca 725  Q
    ||||||||||||||| | || |||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  41986254 gcttattcaatcacccg-gttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 779
Target Start/End: Original strand, 6270235 - 6270345
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||||  ||||  ||| |||||| ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||  ||| ||    
T  6270235 gagtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagtttcggtcttt 6270334  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  6270335 tctgttagttt 6270345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 779
Target Start/End: Original strand, 38407448 - 38407558
Alignment:
Q  669 gagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctt 768  Q
    ||||||||||||||||| | ||||   || |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  ||||||    
T  38407448 gagtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctt 38407547  T
Q  769 tctggtagttt 779  Q
    |||| ||||||    
T  38407548 tctgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 707
Target Start/End: Complemental strand, 22226718 - 22226665
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccc 707  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  22226718 gcttattcaatcacctga-tcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 47373612 - 47373665
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagtcgtttctg 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 654 - 783
Target Start/End: Complemental strand, 46003593 - 46003465
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 753  Q
    |||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||    
T  46003593 cttatttaatcatctg-gtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcatta 46003495  T
Q  754 ctagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||||||||||||||||||||    
T  46003494 ctagttttagtcctttctggtagtttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 653 - 821
Target Start/End: Original strand, 51663251 - 51663420
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||| ||||||| | ||| |||||||||||||||||| ||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||||    
T  51663251 gcttatttaatcacccg-gtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  753 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 821  Q
    ||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||    
T  51663350 actagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 40244626 - 40244756
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgg-tcccctatgttttgcttcgt 751  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||    
T  40244626 gcttattcaatcatccga-tcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgt 40244724  T
Q  752 tactagttttagtcctttctggtagtttctct 783  Q
    |||||||||||||| |||||| ||||||||||    
T  40244725 tactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 51663596 - 51663467
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||    
T  51663596 gcttattcaatcatccg-gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgtt 51663498  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| |||||| ||||||||||    
T  51663497 actagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 671 - 783
Target Start/End: Original strand, 20537944 - 20538056
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    |||||||||||||||||||  | | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20537944 gtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctttc 20538043  T
Q  771 tggtagtttctct 783  Q
    |  ||||||||||    
T  20538044 tattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 655 - 783
Target Start/End: Original strand, 46003251 - 46003378
Alignment:
Q  655 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 754  Q
    ||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| || |  |||||    
T  46003251 ttattcaatcacccg-gtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttac 46003349  T
Q  755 tagttttagtcctttctggtagtttctct 783  Q
     |||||||||||||| || ||||||||||    
T  46003350 aagttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 653 - 783
Target Start/End: Complemental strand, 20538280 - 20538151
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||| | |||| |||| |||||||||||||| |||||| |||||||||||||||||||| |||||| ||   |||||||||||| ||||    
T  20538280 gcttattcaatcacccg-gtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtt 20538182  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    ||||||||||||| |||||| ||||||||||    
T  20538181 actagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 655 - 764
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  655 ttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 754  Q
    |||||||||||| || |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||||||    
T  40364301 ttattcaatcacttg-gtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttac 40364204  T
Q  755 tagttttagt 764  Q
    ||||||||||    
T  40364203 tagttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 672 - 783
Target Start/End: Original strand, 40364060 - 40364171
Alignment:
Q  672 tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 771  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| |||||| | ||||||| ||||| ||||||||||| ||| |    
T  40364060 tcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttattagttttagtcattttt 40364159  T
Q  772 ggtagtttctct 783  Q
    | ||||||||||    
T  40364160 gttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 719 - 772
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 653 - 715
Target Start/End: Complemental strand, 40244934 - 40244873
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactata 715  Q
    |||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  40244934 gcttattcaatcacccc-gtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 765
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 765  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 51663399 - 51663452
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 772  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttctg 51663452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 653 - 783
Target Start/End: Original strand, 21249363 - 21249492
Alignment:
Q  653 gcttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 752  Q
    ||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  21249363 gcttattcaatcacctg-gtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  753 actagttttagtcctttctggtagtttctct 783  Q
    |||||||||| ||||||||| ||||||||||    
T  21249462 actagttttaatcctttctgttagtttctct 21249492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 769
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  719 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 737 - 783
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  737 tatgttttgcttcgttactagttttagtcctttctggtagtttctct 783  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 704
Target Start/End: Complemental strand, 21249678 - 21249629
Alignment:
Q  654 cttattcaatcacctgagtcccttaacttaattgattgtcttaatttggtc 704  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  21249678 cttattcaatcatctt-gtcccttaacttaattgattgtcttaatttggtc 21249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 705 - 769
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  705 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 769  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||||||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 779
Target Start/End: Complemental strand, 61150 - 61042
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    ||||||||||||||||| ||||   || |||||||| ||| | ||||||||||||| || |||| ||| |||||||| |||||  |||||  ||||||||    
T  61150 gtcccttaacttaattgtttgtaccaaattggtcccttaaatttaatttgtaccaaattcgtcctctaagttttgctccgttatcagtttaggtcctttc 61051  T
Q  771 tggtagttt 779  Q
    || ||||||    
T  61050 tgttagttt 61042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 671 - 779
Target Start/End: Original strand, 60778 - 60886
Alignment:
Q  671 gtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 770  Q
    ||||||||||||||||  |||| |||| |||||||| ||| | ||||||||||||| |  |||| | | |||||||| | ||| ||||||  ||||||||    
T  60778 gtcccttaacttaattatttgtattaaattggtcccttaaatttaatttgtaccaaatgagtcctcaaagttttgctccattaatagtttaggtcctttc 60877  T
Q  771 tggtagttt 779  Q
    || ||||||    
T  60878 tgttagttt 60886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University