View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_11 (Length: 515)
Name: NF15360_low_11
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 37 - 500
Target Start/End: Complemental strand, 3419739 - 3419273
Alignment:
| Q |
37 |
tgttagaaaagtatagggtgttgcggtcttttttatttaattaagtaacgtaaccaaaataatcannnnnnnnn--agagaataaccaaaataatcaagt |
134 |
Q |
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| T |
3419739 |
tgttagaaaagtatagggtgttgcggtcttttttatttaattaagtaacgtaaccaaaataatcaatttttttttgagagaataaccaaaataatcaagt |
3419640 |
T |
|
| Q |
135 |
aaatgccatttatattaataata-taagaatgcagataatgtggtccccaattatgacaacgacaatgagatgtgttttctggtgcgacaagtgccagca |
233 |
Q |
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| T |
3419639 |
aaatgccatttatattaataataataagaatgcagataatgtggtccccaattatgacaacgacaatgagatgtgttttctggtgcgacaagtgccagca |
3419540 |
T |
|
| Q |
234 |
acaatgaattcttgctaaattgtgaggacagttggcttgaaaacaaaaattgttggagcattacacaatttgttgtagccattcaattaaacgagcacga |
333 |
Q |
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| T |
3419539 |
acaatgaattcttgctaaattgtgaggacagttggcttgaaaacaaaaattgttggagcattacacaatttgttgtagccattcaattaaacgagcacga |
3419440 |
T |
|
| Q |
334 |
atggacatggggtttctgttggtgaggttatcaattttgttgttttgacaagaggttacccagaaactaggatagatcataaagaaggaagataaaatta |
433 |
Q |
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| T |
3419439 |
atggacatggggtttctgttggtgaggttatcaattttgttgttttgacaagaggttacccagaaactaggatagatcataaagaaggaagataaaatta |
3419340 |
T |
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| Q |
434 |
aaactctttccatttataaatacaattatattctttgaatatctaaatatttagatcttatatattt |
500 |
Q |
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| T |
3419339 |
aaactctttccatttataaatacaattatattctttgaatatctaaatatttagatcttatatattt |
3419273 |
T |
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