View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_13 (Length: 445)
Name: NF15360_low_13
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 25538119 - 25537686
Alignment:
| Q |
1 |
tcttatgagtcttatgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggttgatcgttgtttcaag |
100 |
Q |
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| T |
25538119 |
tcttatgagtcttttgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttgaagattttaaacaaaatggttgatcgttgtttcaag |
25538020 |
T |
|
| Q |
101 |
gtggttgcaaccttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaaatgggagaacaattac |
200 |
Q |
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| T |
25538019 |
gtggttgcaaccttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaaatgggagaacaattac |
25537920 |
T |
|
| Q |
201 |
ccgtgccagaccccacttgctatgaggttgtcatcaagggactgtgcggtgaaggtttgttggatgaaagccgagagttgccgaacctagctatgattcg |
300 |
Q |
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| T |
25537919 |
ccgtgccagaccccacttgctatgaggttgtcatcaagggactgtgcggtgaaggtttgttggatgaaagccgagagttgccgaacctagctatgattcg |
25537820 |
T |
|
| Q |
301 |
tgatattttcgctgaagtttttaagagtgtttggaaggtttttcctaagattattttcata---tgtaaggtcttagaaataagagggtttttcctaaaa |
397 |
Q |
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| T |
25537819 |
tgatattttcgctgaagtttttaagagtgtttggaaggtttttcctaagattcttttcatattgtgtaaggtcttagaaataagagggtttttcctaaaa |
25537720 |
T |
|
| Q |
398 |
tttcagggctagttacatagtcaaatgttgtaat |
431 |
Q |
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| T |
25537719 |
tttcagggctagttacatagtcaaatgttgtaat |
25537686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 25544391 - 25544220
Alignment:
| Q |
13 |
tatgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggttgatcgttgtttcaaggtggttgcaacc |
112 |
Q |
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| T |
25544391 |
tatgtctttgattgacgcatgtttgaaagtcaatagcattgatgatgctttgaggattttaaacaagatggtggatgttggtatcaaggtggacacgccc |
25544292 |
T |
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| Q |
113 |
ttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaa |
184 |
Q |
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| T |
25544291 |
tctagcaacagggtgtttggcaaattgattaagaatggtaaagttatggactgtgcacacattttgagcaaa |
25544220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 43224237 - 43224470
Alignment:
| Q |
32 |
tatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggttgatcgttgtttcaaggtggttgcaaccttggccaacagagtgttta |
131 |
Q |
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| T |
43224237 |
tatttgaaagtgggtaacattgatgatgctttgagggtatttaacaagatggtggatcgtggtttgagggtgactgctaccttcggcaatagggtttttg |
43224336 |
T |
|
| Q |
132 |
atgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaaatgggagaacaattacccgtgccagaccccacttgctatgaggttgt |
231 |
Q |
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| T |
43224337 |
atgaattgattaagaatggtaaagttattgagtgtgctcagattttgagcaaaatgggtggacaagatcctaagcctgatcccacctgctatgaggttgt |
43224436 |
T |
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| Q |
232 |
catcaagggactgtgcggtgaaggtttgttggat |
265 |
Q |
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| T |
43224437 |
gatcaagggactgtgtgctgaaggtttgttggat |
43224470 |
T |
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