View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_18 (Length: 394)
Name: NF15360_low_18
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 2630884 - 2631239
Alignment:
| Q |
16 |
aacaagaattaacaaagacactcaaaagcatcgaaggcaaagacaccaaaatgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630884 |
aacaagaattaacaaagacactcaaaagcatcgaagacaaagacaccgaagtgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
2630983 |
T |
|
| Q |
116 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630984 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
2631083 |
T |
|
| Q |
216 |
cacctaatcgatctactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
315 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631084 |
catctaatcgatcaactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
2631183 |
T |
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| Q |
316 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttctt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631184 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttctt |
2631239 |
T |
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