View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15360_low_23 (Length: 357)
Name: NF15360_low_23
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_23 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 40663671 - 40664013
Alignment:
| Q |
14 |
agagcaaagaaagacgattcattaaaactcaaaaacaggcatattaattcagaagtttatacttaacacggttgttaatactaaaagtaatcaaaaccag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40663671 |
agagcaaagaaagacaattcattaaaactcaaaaacaggcatattaattcagaagtttatacttaacacggttgttaatactaaaagtaatcaaaaccag |
40663770 |
T |
|
| Q |
114 |
gcacattattatttgattgaaactacaagcttgaaaccatcaaatgggaaaacaaaaagaatgaaagaagcaatctagaacaaaccgatgggtgatagtt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40663771 |
gcacattattatttgattgaaactacaagcttgaaaccatcaaatgggaaaacaaaaagaatgaaagaagcaatctagaacaaaccgat-ggtgatagtt |
40663869 |
T |
|
| Q |
214 |
accttagtccggccatagggattcatggcttgtaacttgaaatcctccacacagggtatcgtgtcagggtgaccataaacagtagcagatgatgaaaaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40663870 |
accttagtccggccatagggattcatggcttgtaacttgaaatcctccacacagggtatcgtgtcaggttgaccataaacagtagcagatgatgaaaaaa |
40663969 |
T |
|
| Q |
314 |
ccatctgtgcagaagcacaaacatgttaggtcaatcatacagcc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40663970 |
ccatctgtgcagaagcacaaacatgttaggtcaatcatacagcc |
40664013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University