View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_27 (Length: 307)
Name: NF15360_low_27
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 40201125 - 40201414
Alignment:
| Q |
1 |
tcacctcataaattagttttatacgcgttgagctaagctcaatcaaaatttaaaaattacattatattatgaattaggacacggtaaaagcaccaccatc |
100 |
Q |
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| T |
40201125 |
tcacctcataaattagttttatacgcgttgagctaagctcaatcaaaatttaaaaattacattatattatgaattaggacacggtaaaagcaccaccatc |
40201224 |
T |
|
| Q |
101 |
tgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201225 |
tgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaat |
40201324 |
T |
|
| Q |
201 |
tcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacctt |
290 |
Q |
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| T |
40201325 |
tcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacctt |
40201414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 40204741 - 40205005
Alignment:
| Q |
29 |
tgagctaagctcaatcaaaatttaaaaattacattat-attatgaattaggacacggtaaaagcaccaccatc---tgaggcaaaaacaatgaagaaggc |
124 |
Q |
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|||| |||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| ||||||||||| | ||||||||| |||||||||||||| |
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| T |
40204741 |
tgagttaagctcaatcaaagtttaaaaattatattattattatgaatcaggacacggttaaagcaccacctccgactgaggcaaagacaatgaagaaggc |
40204840 |
T |
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| Q |
125 |
tacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtcctggaaaccttttaacc |
224 |
Q |
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|||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40204841 |
tacaatcatcagcgttgcatcgacaacatttttctacatgctttgcggctgttttggatatgctgcgtttggaaattcaagtcctggaaaccttttaacc |
40204940 |
T |
|
| Q |
225 |
ggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacct |
289 |
Q |
| |
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| T |
40204941 |
ggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacct |
40205005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 40208769 - 40209051
Alignment:
| Q |
8 |
ataaattagttttatacgcgttgagctaagctcaatcaaaatttaaaaattacattatattatgaattaggacacggtaaaagcaccacca---tctgag |
104 |
Q |
| |
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|||| ||||||||||| | |||||| ||||||||||||||||||||||| | || | |||||||| |||||||||||||||||||||| |||||| |
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| T |
40208769 |
ataagttagttttatagg-gttgagttaagctcaatcaaaatttaaaaaatt-atgttgttatgaatcaggacacggtaaaagcaccacctccgtctgag |
40208866 |
T |
|
| Q |
105 |
gcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||| |||||||||||||| || || ||||||||||||| |
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| T |
40208867 |
gcaaaaacaatgaagaaggctacaatcatcggcgttgcagcgacagcatttttctacatgctttgtggctgttttggatacgcggcatttggaaattcaa |
40208966 |
T |
|
| Q |
205 |
gtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40208967 |
gtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgttgccatagttatccacct |
40209051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 10298772 - 10298589
Alignment:
| Q |
108 |
aaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtc |
207 |
Q |
| |
|
||||||||||| |||||||| | ||||| ||| || ||||| |||||||||||| | || || ||||| ||||| || || |||||| | ||||||| |
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| T |
10298772 |
aaaacaatgaaaaaggctaccttaatcagtgttatagtaacaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtc |
10298673 |
T |
|
| Q |
208 |
ctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccaccttg |
291 |
Q |
| |
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||||||||||| |||||||||| ||||||||||| || || |||||||| || ||||||||||| || || ||||||||||||| |
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| T |
10298672 |
ctggaaaccttctaaccggtttcggtttctataatcctttctggctcctcgatatagccaatgccgcaattgttatccaccttg |
10298589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 10295105 - 10294987
Alignment:
| Q |
147 |
acaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccat |
246 |
Q |
| |
|
||||| |||||||||||| | | ||| ||||||||||| || | |||||| | ||||| || | ||||||| |||||| |||||||||||||||||| | |
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| T |
10295105 |
acaaccattttctacatgatgtacggttgttttggatacgcaacttttggagactcaagccccgtaaaccttctaaccgtttttggtttctataaccctt |
10295006 |
T |
|
| Q |
247 |
tttggctccttgacatagc |
265 |
Q |
| |
|
||||||||| || ||||| |
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| T |
10295005 |
cttggctcctagatatagc |
10294987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 27876019 - 27876080
Alignment:
| Q |
207 |
cctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaa |
268 |
Q |
| |
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|||||||| ||||| || |||||||| ||||||||||| | |||||| |||||||| ||||| |
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| T |
27876019 |
cctggaaatcttttgactggttttggattctataacccctattggcttcttgacattgccaa |
27876080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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