View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_3 (Length: 645)
Name: NF15360_low_3
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 10598987 - 10598371
Alignment:
| Q |
18 |
attacaattatacatcattatcaatacaacaagactcataccatgccgccattacatacaaaatccacattcacatgattactcagaagagtttgaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598987 |
attacaattatacatcattatcaatacaacaagactcataccatgccgccattacatacaaaatccacattcacatgattactcagaagagtttgaacaa |
10598888 |
T |
|
| Q |
118 |
gacattgaccaagacattttgggagttactggtttatgtctctttgtcctcactttcttactccttttagttttggctagtttcttctccaaatctttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598887 |
gacattgaccaagacattttgggagttactggtttatgtctctttgtcctcactttcttactccttttagttttggctagtttcttctccaaatctttta |
10598788 |
T |
|
| Q |
218 |
ctctcccagtcaaatttgatattacacttatctgttcattcccagcttcaagcaactccttcatcagcttccttagcttctcattctcttccagtaatct |
317 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598787 |
ctctcccagtcaaagttgatattacacttatctgttcattcccagcttcaagcaactccttcatcagcttccttagcttctcattctcttccagtaatct |
10598688 |
T |
|
| Q |
318 |
catgtcaccattcaaatctgcagatactttcgtttttataccggttggttctctgtcagcagtgtcttgaacatcagcttttgttgcttgctgtgcaaga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10598687 |
catgtcaccattcaaatctgcagatactttcgtttttgtaccggttggttctctgtcagcagtgtcttgaacatcagcttttgtttcttgctgtgcaagc |
10598588 |
T |
|
| Q |
418 |
ttttcttctgattccttttcattcatcattatgatatctagatcatttgcttcttgattcccatgatcagaaatttcaagaggtggtaacttagagtcaa |
517 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598587 |
ttttcttctggttccttttcattcatcattatgatatctagatcattcgcttcttgattcccatgatcagaaatttcaagaggtggtaacttagagtcaa |
10598488 |
T |
|
| Q |
518 |
ttccaattcctgattcttctgtgtctattggtgtatctgctatgtgtccatcatcttctttctggaactcaatcttcacccaaccatctgattcctcact |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10598487 |
ttccaattcctgattcttctgtgtctattggtgtatctgctatgtgtccatcatcttctttctggaactcaatctttacccaaccatctgattcctcact |
10598388 |
T |
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| Q |
618 |
agacttaacatcttctt |
634 |
Q |
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||||||||||||||||| |
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| T |
10598387 |
agacttaacatcttctt |
10598371 |
T |
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