View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15360_low_31 (Length: 272)

Name: NF15360_low_31
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15360_low_31
NF15360_low_31
[»] chr3 (6 HSPs)
chr3 (70-272)||(25880721-25880925)
chr3 (70-240)||(42588857-42589027)
chr3 (72-158)||(25880283-25880369)
chr3 (80-157)||(5819523-5819600)
chr3 (80-157)||(54545137-54545214)
chr3 (16-64)||(42589129-42589177)
[»] chr6 (3 HSPs)
chr6 (70-240)||(1472703-1472872)
chr6 (80-157)||(26977141-26977218)
chr6 (80-157)||(27874957-27875034)
[»] chr4 (4 HSPs)
chr4 (70-240)||(2002792-2002962)
chr4 (80-157)||(42269895-42269972)
chr4 (80-157)||(48698069-48698146)
chr4 (80-157)||(30946431-30946508)
[»] chr8 (3 HSPs)
chr8 (70-240)||(24594729-24594899)
chr8 (80-157)||(9440339-9440416)
chr8 (16-64)||(24594579-24594627)
[»] chr7 (2 HSPs)
chr7 (70-240)||(7505001-7505171)
chr7 (16-64)||(7504851-7504899)
[»] chr5 (2 HSPs)
chr5 (80-157)||(34356002-34356079)
chr5 (80-157)||(41722402-41722479)
[»] chr2 (1 HSPs)
chr2 (80-157)||(829471-829548)
[»] scaffold0074 (1 HSPs)
scaffold0074 (80-157)||(28283-28360)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 70 - 272
Target Start/End: Complemental strand, 25880925 - 25880721
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||| |||||||||          ||    
T  25880925 tgtagtagatagagcgacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtatgaacacataaccggtagtagatttttttttttta 25880826  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaatctgaaacataatgcaac--ttgaggtttccttttttatatatctca 267  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25880825 tcaagatctcctgcaaaatctgaatctacataaccctttacaataaattccaatctgaaacataatgcaacatctgaggtttccttttttatatatctca 25880726  T
Q  268 ggatt 272  Q
     ||||    
T  25880725 cgatt 25880721  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 42589027 - 42588857
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||  ||||||||||||||||  | ||||||||||| |||||||          ||    
T  42589027 tgtagtagatagagctacgacagattgtaattttgacaaccaacttaccgctcctcctgcaagtgtgaacacataaccagcagtagat---cttctttta 42588931  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaa---tctgaaacataatgcaac 240  Q
    |||||||| ||||||||||||||||| ||||||||  | || |||||||||||   ||||| ||||||||||||    
T  42588930 tcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgacacataatgcaac 42588857  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 25880369 - 25880283
Alignment:
Q  72 tagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagata 158  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||| ||| ||||||    
T  25880369 tagtagatagggctacgacaatttgtaattttgacaaccaacttattgctcctcttgcaagtgtgaacacataaccggtattagata 25880283  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 5819523 - 5819600
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  5819523 agagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 5819600  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 54545214 - 54545137
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||| |||||||  | |||||||||||||||||||    
T  54545214 agagctacaacagtttgtaacttggacaaccaacttactgctcctccggcaagtgtgaacacataaccagtagtagat 54545137  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 42589177 - 42589129
Alignment:
Q  16 atgaaagaccggattccttgcaatgtgaaattcactctgaccgtcacaa 64  Q
    ||||||||| ||||||||||||||||| ||| |||| |||| |||||||    
T  42589177 atgaaagactggattccttgcaatgtgcaatgcactatgactgtcacaa 42589129  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 1472703 - 1472872
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||          ||    
T  1472703 tgtagtagagagagctacgacaatt-gtaattttgacaaccaacttactgctcctcctgcaagtgtgaacacataaccagtagtagat---cttctttta 1472798  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaa---tctgaaacataatgcaac 240  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||||||||||||   ||||||||||||||||||    
T  1472799 tcaagatcacctgcaaaatctgaatcaacataacctttgacgataaattccaatcctctgaaacataatgcaac 1472872  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 26977141 - 26977218
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  26977141 agagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 26977218  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 27874957 - 27875034
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  27874957 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 27875034  T

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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 2002962 - 2002792
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||          ||    
T  2002962 tgtagtagatagagctacgacagattgtaattttgacaaccaacttactgctcctcctgcaagtgtgaacacataaccagtagtagat---cttctttta 2002866  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaa---tctgaaacataatgcaac 240  Q
    |||||||| ||||||||||||||||| ||||||||  | || |||||||||||   ||||||||||||||||||    
T  2002865 tcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaac 2002792  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 42269972 - 42269895
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  42269972 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 42269895  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 48698069 - 48698146
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  48698069 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 48698146  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 30946431 - 30946508
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||| ||| |  | |||||||||||||||||||    
T  30946431 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgtaagcgtgaacacataaccagtagtagat 30946508  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 24594729 - 24594899
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    |||||||||||||||||| |||  ||||||||||||||| |||||||| ||||||||||||||||  | |||||||||||||||||||          ||    
T  24594729 tgtagtagatagagctacgacagattgtaattttgacaatcaacttatcgctcctcctgcaagtgtgaacacataaccagtagtagat---cttctttta 24594825  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaa---tctgaaacataatgcaac 240  Q
    |||||||| ||||||||||||||||| ||||||||  | || |||||||||||   ||||||||||||||||||    
T  24594826 tcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaac 24594899  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 9440339 - 9440416
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  9440339 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 9440416  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24594579 - 24594627
Alignment:
Q  16 atgaaagaccggattccttgcaatgtgaaattcactctgaccgtcacaa 64  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| |||||||    
T  24594579 atgaaagactggattccttgcaatgtgcaatgcactctgactgtcacaa 24594627  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 7505001 - 7505171
Alignment:
Q  70 tgtagtagatagagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagatannnnnnnnata 169  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||          ||    
T  7505001 tgtagtagatagagctacgacaaattgtaattttgacaatcaacttaccgctcctcctgcaagtgtgaacacataaccagtagtagat---cttctttta 7505097  T
Q  170 tcaagatctcctgcaaaatctgaatctacataacccattacgataaattccaa---tctgaaacataatgcaac 240  Q
    |||||||| ||||||||||||||||| ||||||||  | || |||||||||||   ||||||||||||||||||    
T  7505098 tcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaac 7505171  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 7504851 - 7504899
Alignment:
Q  16 atgaaagaccggattccttgcaatgtgaaattcactctgaccgtcacaa 64  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| |||||||    
T  7504851 atgaaagactggattccttgcaatgtgcaatgcactctgactgtcacaa 7504899  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 34356079 - 34356002
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  34356079 agagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 34356002  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 41722479 - 41722402
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||  ||||||| || ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  41722479 agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 41722402  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 829548 - 829471
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || || |||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  829548 agagctacaacagtttgtaacttggataaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat 829471  T

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Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 28283 - 28360
Alignment:
Q  80 agagctacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtggtagcacataaccagtagtagat 157  Q
    |||||||||||| ||||||| || || |||||||||| ||||||||||| |||||  | ||||||| |||||||||||    
T  28283 agagctacaacagtttgtaacttggataaccaacttactgctcctcctgaaagtgtgaacacataatcagtagtagat 28360  T

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