View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_32 (Length: 268)
Name: NF15360_low_32
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 41969472 - 41969222
Alignment:
| Q |
1 |
ctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgttt |
100 |
Q |
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| T |
41969472 |
ctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgttt |
41969373 |
T |
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| Q |
101 |
cttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgttgttt |
200 |
Q |
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| T |
41969372 |
cttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttg---tgttt |
41969276 |
T |
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| Q |
201 |
cttcttgtacagagcaaggtaaatcgacatattattatgctatgcatatttatc |
254 |
Q |
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| T |
41969275 |
cttcttgtacagagcaaggtaaatcgacatattattatgctatgaatatttatc |
41969222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1236535 - 1236305
Alignment:
| Q |
1 |
ctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaa-atgctataaatacgtaactcaac--- |
96 |
Q |
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| T |
1236535 |
ctaaaggtggctctaggtggatctttcatcactaaaatagagcca-cctttcatagattcagttcatgtagaatttgctataaatacgtaactcaacaat |
1236437 |
T |
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| Q |
97 |
gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgtt |
196 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1236436 |
tcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttg---t |
1236340 |
T |
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| Q |
197 |
gtttcttcttgtacagagcaaggtaaatcgacata |
231 |
Q |
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| T |
1236339 |
gtttcttcttgtacaaagcaaggtatattgacata |
1236305 |
T |
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