View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_35 (Length: 251)
Name: NF15360_low_35
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_35 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 40200843 - 40201038
Alignment:
| Q |
56 |
atagaaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaaagctcagaaagtttgggggagtttgcaagctcttggtgacatagctt |
155 |
Q |
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| T |
40200843 |
ataggaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaaagctcagaaagtttgggggagtttgcaagctcttggtgacatagctt |
40200942 |
T |
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| Q |
156 |
ttgcatacgcatactccatgatccttatagaaattcaggtattaattcattttcttgtttatcttttttataggacatgttttgttccataactta |
251 |
Q |
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| T |
40200943 |
ttgcatacgcatactccatgatccttatagaaattcaggtattaattcattttcttgtttatcttttttataggacatgttttgttccataactta |
40201038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 40204382 - 40204625
Alignment:
| Q |
6 |
cttttattgtctataataaataaaaacgtttaactcaaattggtcatgtaatagaaaataaaaagattgatggaaccatggctggggtaactgatgtgac |
105 |
Q |
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| T |
40204382 |
cttttattgtctataataaa-aaaaatgtttgattcaaattggtcatgtaatagaaaataaaaagattgatggaaccgtaaccggggtaactgatgtaac |
40204480 |
T |
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| Q |
106 |
aaaagctcagaaagtttgggggagtttgcaagctcttggtgacatagcttttgcatacgcatactccatgatccttatagaaattcaggtattaattcat |
205 |
Q |
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| T |
40204481 |
aaaagctcagaaagtttgggggagttttcaagctcttggtgacatagcctttgcatattcatactccatgatccttatagaaattcaggtattaattcat |
40204580 |
T |
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| Q |
206 |
tttcttgtttatcttttttataggacatgttttgttccataactt |
250 |
Q |
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| T |
40204581 |
tttcttgtatttcttttttataagacttgttttgttccataactt |
40204625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 40208477 - 40208666
Alignment:
| Q |
56 |
atagaaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaaagctcagaaagtttgggggagtttgcaagctcttggtgacatagctt |
155 |
Q |
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| T |
40208477 |
ataggaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaaagctcagaaagtttgggggagtttgcaagctcttggtgacatagcct |
40208576 |
T |
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| Q |
156 |
ttgcatacgcatactccatgatccttatagaaattcaggtattaattcattttcttgt-ttatcttttttataggacatgttttgttcca |
244 |
Q |
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| T |
40208577 |
ttgcatactcatactccatgatccttatagaaattcaggtattagttcattttcctatattttctttgttataagacttgttttgttcca |
40208666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 10298880 - 10298802
Alignment:
| Q |
116 |
aaagtttgggggagtttgcaagctcttggtgacatagcttttgcatacgcatactccatgatccttatagaaattcagg |
194 |
Q |
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| T |
10298880 |
aaagtttggaggagtttccaagctcttggtaacatagcctttgcctactcctactcaatgatccttatagaaattcagg |
10298802 |
T |
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