View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_39 (Length: 238)
Name: NF15360_low_39
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 47494135 - 47494352
Alignment:
| Q |
18 |
ttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttcctt |
117 |
Q |
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| T |
47494135 |
ttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttcctt |
47494234 |
T |
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| Q |
118 |
caaagacataataatcatcttccaattgaaactgtgatagccctggcacattacactcctccatctttgcagccagagaaagacatgcgattgatagcaa |
217 |
Q |
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| T |
47494235 |
caaagac---ataatcatcttccaattgaaactgtgatagctctggcacattacactcctccatctttgcagccagagaaagacatgcaattgatagcaa |
47494331 |
T |
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| Q |
218 |
cctcattgcccaatccttctc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
47494332 |
cctcattgcccaatccttctc |
47494352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 24221330 - 24221431
Alignment:
| Q |
13 |
catcattgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |
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| T |
24221330 |
catccttgatgaagtaagaaaggaatgaaaagggagtgataatactcatgttccaatctaatctgctaagaacaaaaagctccattttttgaactacttt |
24221429 |
T |
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| Q |
113 |
tc |
114 |
Q |
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|| |
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| T |
24221430 |
tc |
24221431 |
T |
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