View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_4 (Length: 617)
Name: NF15360_low_4
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23615991 - 23616308
Alignment:
| Q |
1 |
gggtcgaatgagaataatagtatttcatcaagttcacgatggaacccaacaaaagaacaaataagtatgttggagaatttgtataagcaaggaataaaga |
100 |
Q |
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| T |
23615991 |
gggtcgaatgggaataatagtatttcatcaagttcacgatggaacccaacaaaagaacaaataagtatgttggagaatttgtataagcaaggaataaaga |
23616090 |
T |
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| Q |
101 |
caccaagtgccgaagaaatacaagaaatcactgctaggcttagagtgtatggtcacatcgaaggaaagaatgtcttttactggtttcagaatcacaaagc |
200 |
Q |
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| T |
23616091 |
caccaagtgctgaagaaatacaagaaatcactgctaggcttagagtgtatggtcacatcgaaggaaagaatgtcttttactggtttcagaatcacaaagc |
23616190 |
T |
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| Q |
201 |
tagacagagacagaaacagaagcaagaaagtattgcttatttcaatcgacttcttcatagacctcaacccatttatccttcacctatttgtccaaatggt |
300 |
Q |
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| T |
23616191 |
aagacagagacagaaacagaagcaagaaagtattgcttatttcaatcgacttcttcatagacctcaacccatttatccttcacctatttgtccaaatggt |
23616290 |
T |
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| Q |
301 |
atgttctcaacttcttcc |
318 |
Q |
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| T |
23616291 |
atgttctcaacttcttcc |
23616308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 409 - 603
Target Start/End: Original strand, 23616399 - 23616593
Alignment:
| Q |
409 |
ttctaggccaaaaatagtactcagtactagtagatatttcagatttttaaccatgattttaaattgtgctagcggacttgtggttatgctgcaaannnnn |
508 |
Q |
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| T |
23616399 |
ttctaggccaaaaatagtactccgtactagtagatatttcagatttttaaccatgattttaaattgtgctagcggacttgtggttatgctgcaaattttt |
23616498 |
T |
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| Q |
509 |
nnnnnnnnnnnatctttgtacgaacataaaatggtttatgataaaatattatgatgtaatttgattattgtagcgaacttcttgttgttgtatct |
603 |
Q |
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| T |
23616499 |
tatttatttttatctttgtacgaacataaaatggtttatgatagaatattatgatgtaatttgattcttgtagcgaacttcttattgttgtatct |
23616593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 8554920 - 8554831
Alignment:
| Q |
126 |
aatcactgctaggcttagagtgtatggtcacatcgaaggaaagaatgtcttttactggtttcagaatcacaaagctagacagagacagaa |
215 |
Q |
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| T |
8554920 |
aatctctgctaggttaagacagtatggtaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaagacagaa |
8554831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 573
Target Start/End: Complemental strand, 7615669 - 7615638
Alignment:
| Q |
542 |
gtttatgataaaatattatgatgtaatttgat |
573 |
Q |
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| T |
7615669 |
gtttatgataaaatattatgatgtaatttgat |
7615638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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