View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_43 (Length: 221)
Name: NF15360_low_43
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27658308 - 27658532
Alignment:
| Q |
1 |
cattttacaggcttttacattcagttctccagctgatggtcctcttcgtaaggatgcaccaacatggtgtcgtgctccttttgaacctgagggnnnnnnn |
100 |
Q |
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| T |
27658308 |
cattttacaggcttgcacattcagttctccagctgatggtcctcttcgtaaggatgcaccaacatggtgtcgtgctccttttgaacctgagggttttttg |
27658407 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnccaaaatagatattcattaattaatgaatgatagattaatataaaataagtcatgaat----aatagcatgtatgatatacatg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27658408 |
aggtattttttcttttccaaaatagatattcattaattaatgaatgatagattaatataaaataagtcatgaataataaatagcatgtatgatatacatg |
27658507 |
T |
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| Q |
197 |
ccttttacaaactaaactaacattc |
221 |
Q |
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|||||||||||||||||| |||||| |
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| T |
27658508 |
ccttttacaaactaaacttacattc |
27658532 |
T |
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