View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15360_low_44 (Length: 218)
Name: NF15360_low_44
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_44 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47735736 - 47735945
Alignment:
| Q |
1 |
gagttggattaaattgagttaaagggctataaagtaaagttatttatgaaggaagagagtataaaggatactaataatatagaggcaattataggcatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |
|
|
| T |
47735736 |
gagttggattaaattgagttaaagggctacaaagtaaagttatttatgaagggagagagtgtaac-------aaaaatatagagccaattataggcatga |
47735828 |
T |
|
| Q |
101 |
aaatgcatggcatgagaatagtgaaatgaaagagtatttaaaataaacaattgcaatagccaaacatgatggcagagtgggaggcacagcac-aaagggt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47735829 |
aaatgcatggcatgagaatagtgaaatgaaagagtatttaaaattaacaattgcaatagccaaacatgatggcagagtgggaggcacagcacaaaagggt |
47735928 |
T |
|
| Q |
200 |
acagagagggccacaacag |
218 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
47735929 |
gc--agagggccacaacag |
47735945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University