View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_5 (Length: 611)
Name: NF15360_low_5
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 12 - 611
Target Start/End: Complemental strand, 47494926 - 47494331
Alignment:
| Q |
12 |
atgaaaaagaagcgtgcttggaagttgaagagatagatgaagaatggtcaatgaatcaatcacttcaagaatttggtgtatctgaggaggagcatgttgg |
111 |
Q |
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| T |
47494926 |
atgaaaaagaaacgtgcttggaagttgaagagagagatgaagaatggtcaatgaatcaatcacatcaagaatttggtgtatctgaggaggagcatgttgg |
47494827 |
T |
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| Q |
112 |
attattgcttcaaagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattgg |
211 |
Q |
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| T |
47494826 |
attattgcttcaaagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattgg |
47494727 |
T |
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| Q |
212 |
attctcaaagttagttcatccactatttttctcttttattatatgttattattctaattaagcttcattaatgaaattacaattggagaagnnnnnnnnn |
311 |
Q |
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| T |
47494726 |
attctcaaagttagttcatccactatttttctcttttattatatgttattattctaattcagcttcattaatgaaattacaattggagaa----aaaaaa |
47494631 |
T |
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| Q |
312 |
ntcttgatttggcttcaattttttcctgattttggattgataattatctcagaaaagataagcattggattttcactttgaaacagcttatttgtcagtg |
411 |
Q |
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| T |
47494630 |
atcttgatttggcttcaattttttcctgattttggattgataattatctcagaaaagagaagcattggattttcactttgaaacagcttatttgtcagtg |
47494531 |
T |
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| Q |
412 |
acttacttggatcgattcctttctaaacacttcattgatgtaagctctaattatgatcttccaaatgcagcatttgtttctatcaattggtcactcctgt |
511 |
Q |
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| T |
47494530 |
acttacttggatcgattcctttctaaacacttcattgatgtaagctctaattatgatattccaaatgcagcatttgtttctatcaattggtcactcctgt |
47494431 |
T |
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| Q |
512 |
ttaagttttcatcaatctaattaattgattaattatttaattacccttttggttgaatttttacattttaagcagggtgagaaggattgggcaatgaggt |
611 |
Q |
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| T |
47494430 |
ttaagttttcatcaatctaattaattgattaattatttaattacccttttggttgaatttttacattttaagcagggtgagaaggattgggcaatgaggt |
47494331 |
T |
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