View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15360_low_6 (Length: 580)
Name: NF15360_low_6
Description: NF15360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15360_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 7e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 29443294 - 29443425
Alignment:
| Q |
70 |
aatagtattagagaaaaccatactatataataacttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagctgtga |
169 |
Q |
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| T |
29443294 |
aatagtattagagaaaaccatactatataataacttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagctgtga |
29443393 |
T |
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| Q |
170 |
agggtcagtaactggtcctgggagagtctgca |
201 |
Q |
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| T |
29443394 |
agggtcagtaactggtcctggtagagtctgca |
29443425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 29443509 - 29443585
Alignment:
| Q |
285 |
agatagctataagtatgtcaaatgttaattacccttgctttgctcctcaagtccaaaccagatccaccaatcctgtc |
361 |
Q |
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| T |
29443509 |
agatagctataagtatgttaaatgttaattacccttgctttgctcctcaagtccaaaccagatccaccaatcctgtc |
29443585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 29443685 - 29443732
Alignment:
| Q |
451 |
tggtttggtattgtacttataggtagactggtaggtttgggtttgtat |
498 |
Q |
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| T |
29443685 |
tggtttggtattgtacttataggtagactggtaggtttgggtttgtat |
29443732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 29443248 - 29443281
Alignment:
| Q |
18 |
attaaagaacaaactctttacataattaagggct |
51 |
Q |
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| T |
29443248 |
attaaagaacaaaatctttacataattaagggct |
29443281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 33278426 - 33278522
Alignment:
| Q |
102 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagctgtgaagggtcagtaactggtcctgggagagtct |
198 |
Q |
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| T |
33278426 |
acttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgggaagctttgaagggtcttcaacaggtccagggagagtct |
33278522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 33278900 - 33278941
Alignment:
| Q |
311 |
aattacccttgctttgctcctcaagtccaaaccagatccacc |
352 |
Q |
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| T |
33278900 |
aattacccttcctttgctcctcatgtccataccagatccacc |
33278941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 26250404 - 26250515
Alignment:
| Q |
88 |
catactatataataacttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagctgtgaagggtcagtaactggtcc |
187 |
Q |
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| T |
26250404 |
catactataagataacttcactatcttgtcctggagcttgatttgtgcttgatccatcatagttccatttaggaagttttgaagggtcactcactggacc |
26250503 |
T |
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| Q |
188 |
tgggagagtctg |
199 |
Q |
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| T |
26250504 |
aggtagagtctg |
26250515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 7204919 - 7204982
Alignment:
| Q |
102 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagct |
165 |
Q |
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| T |
7204919 |
acttcactatcttcaccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagct |
7204982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 7193576 - 7193639
Alignment:
| Q |
102 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagct |
165 |
Q |
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| T |
7193576 |
acttcagtatcttcaccaggggcttgtccagtgctagatccatcatagttccacttaggaagct |
7193639 |
T |
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