View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15361_high_2 (Length: 609)

Name: NF15361_high_2
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15361_high_2
NF15361_high_2
[»] chr3 (1 HSPs)
chr3 (1-609)||(38569312-38569920)
[»] chr8 (1 HSPs)
chr8 (23-150)||(34683204-34683331)


Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 38569312 - 38569920
Alignment:
Q  1 ttgtggaggatcagagacaagaaagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaag 100  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38569312 ttgtggaagacctgagacaagaaagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaag 38569411  T
Q  101 tttcgacataaggcggagtgtgcaccggtggagaggtggttagaggaggaggaacatgttgccggggaaggtgacggtggcgttaacgttgatgaggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38569412 tttcgacataaggcggagtgtgcaccggtggagaggtggttagaggaggaggaacatattgccggggaaggtgacggtggcgttaacgttgatgaggtgg 38569511  T
Q  201 ttgtgcttgatagttgataggtttagattgtttttccaaacgttaacgatgacggtaacggaagattgttttggaactgtattttttggcattggatact 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38569512 ttgtgcttgatagttgataggtttagattgtttatccaaacgttaacgatgacagtaacggaagattgttttggaactgtattttttggcattggatact 38569611  T
Q  301 gaaacatggaaaaagttaaaatattaatggtctcatttattactgtggcgttgcataatgcaaagtccaatggtagtgtggtctcctctgttcctttacc 400  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38569612 gaaacatggaaaaagttaaaatattaattgtctcatttattactgtggcgttgcataatgcaaagtccaatggtagtttggtctcctctgttcctttacc 38569711  T
Q  401 aacagtacnnnnnnnnnnnnnnnnnnnnnnnnnctatttattgccctaaagtaacgtgacttactaattttggtttgttggaaaaaagaagttatattag 500  Q
    ||||||||                         |||||||||||||||||||||| |||||   ||||||||||||| ||||||||||||||||  ||||    
T  38569712 aacagtacttttttgagtttttttctttattttctatttattgccctaaagtaacttgactagttaattttggtttggtggaaaaaagaagttactttag 38569811  T
Q  501 gtaaaataaatttttgaaacatgttagtttaggtaattaaaatgtcaacttattactattaggttcataattttggcatcaaatttctgccaaaaagttt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38569812 gtaaaataaatttttgaaacatgttagtttaggtaattaaaatgtcaacttattactattaggttcataattttggcatcaaatttctgccaaaatgttt 38569911  T
Q  601 ttcccatca 609  Q
    |||||||||    
T  38569912 ttcccatca 38569920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 34683331 - 34683204
Alignment:
Q  23 aagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaagtttcgacataaggcggagtgtg 122  Q
    ||||||||||||||||| ||||||||||| ||||  || |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  34683331 aagcatgagtttcgaaggtgttcggtttgtggtgcggttaattattgctcacgtgcttgtcaagcgcttgattggaagtttcgtcataaggctgagtgtg 34683232  T
Q  123 caccggtggagaggtggttagaggagga 150  Q
    | ||||||||  ||||| | ||||||||    
T  34683231 ctccggtggaacggtggcttgaggagga 34683204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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