View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15361_high_3 (Length: 483)
Name: NF15361_high_3
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 53625759 - 53626223
Alignment:
| Q |
19 |
cgcatgacgtgctgggcaaaattttaacaactcgttgtccctggatttttcttttccatctacaggcaataggctgcatataccacagccacactgtata |
118 |
Q |
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| T |
53625759 |
cgcatgacgtgctgggcaaaattttaacaactcgttgtccctggatttttcttttccatctacaggcaataggctgcatataccacagccacactgtata |
53625858 |
T |
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| Q |
119 |
tttgtttgtattgattgtttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattccgacggccaatg |
218 |
Q |
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| T |
53625859 |
tttgtttgtattgattgtttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattccgacggccaatg |
53625958 |
T |
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| Q |
219 |
ttttcgaggatgttaatgttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaatt |
318 |
Q |
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| T |
53625959 |
ttttcgaggatgttaatgttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaatt |
53626058 |
T |
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| Q |
319 |
ttataactcgttgacataacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataagacaatt |
418 |
Q |
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| T |
53626059 |
ttataactcgttgacataacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataaaacaatt |
53626158 |
T |
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| Q |
419 |
gtacgcggcaggtcttcatgtctagttatgtaaatgaattacattacattgcaccagttcttctc |
483 |
Q |
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| T |
53626159 |
gtacgcggcaggtcttcatgtctagttatgtaaatgaattacattacattgcaccagttcatctc |
53626223 |
T |
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