View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15361_high_5 (Length: 323)

Name: NF15361_high_5
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15361_high_5
NF15361_high_5
[»] chr3 (9 HSPs)
chr3 (13-208)||(3592984-3593195)
chr3 (92-212)||(15777308-15777425)
chr3 (20-88)||(24177968-24178036)
chr3 (23-60)||(32657336-32657373)
chr3 (134-211)||(6460042-6460118)
chr3 (134-212)||(9733591-9733668)
chr3 (92-161)||(18534437-18534506)
chr3 (92-161)||(30993253-30993323)
chr3 (27-60)||(32658589-32658622)
[»] chr4 (7 HSPs)
chr4 (92-212)||(23974129-23974249)
chr4 (97-212)||(19611888-19612003)
chr4 (96-212)||(25126202-25126318)
chr4 (97-211)||(15706694-15706808)
chr4 (92-161)||(11153820-11153890)
chr4 (97-145)||(14645763-14645810)
chr4 (27-95)||(18552412-18552479)
[»] chr6 (2 HSPs)
chr6 (92-212)||(9548761-9548880)
chr6 (92-161)||(19769046-19769117)
[»] scaffold0281 (1 HSPs)
scaffold0281 (99-161)||(1859-1921)
[»] scaffold0088 (1 HSPs)
scaffold0088 (97-212)||(35456-35571)
[»] chr8 (2 HSPs)
chr8 (92-212)||(17290631-17290751)
chr8 (20-88)||(42147378-42147446)
[»] scaffold0094 (1 HSPs)
scaffold0094 (92-151)||(48262-48321)
[»] chr7 (7 HSPs)
chr7 (92-203)||(32945355-32945463)
chr7 (26-161)||(3310877-3311014)
chr7 (96-161)||(3312651-3312715)
chr7 (22-88)||(21859820-21859885)
chr7 (92-212)||(18147571-18147691)
chr7 (104-151)||(13695873-13695920)
chr7 (94-151)||(13696071-13696128)
[»] chr1 (5 HSPs)
chr1 (92-212)||(12786243-12786364)
chr1 (92-212)||(18513786-18513906)
chr1 (99-161)||(23632181-23632244)
chr1 (87-212)||(9131648-9131772)
chr1 (26-60)||(18513958-18513992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (108-212)||(182966-183070)
[»] chr5 (2 HSPs)
chr5 (92-212)||(39435924-39436043)
chr5 (92-162)||(39176448-39176520)
[»] chr2 (6 HSPs)
chr2 (92-212)||(16093532-16093651)
chr2 (114-208)||(27386908-27387002)
chr2 (116-212)||(32623568-32623664)
chr2 (22-65)||(16093423-16093466)
chr2 (27-88)||(20180863-20180923)
chr2 (132-212)||(20263671-20263751)
[»] scaffold0005 (1 HSPs)
scaffold0005 (97-145)||(171480-171527)
[»] scaffold0815 (1 HSPs)
scaffold0815 (33-65)||(1279-1311)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 3592984 - 3593195
Alignment:
Q  13 cagagagggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactacacgtatg----------------- 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||                     
T  3592984 cagaaagggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacataaaccctgcactacacgtatgatcatacaacccttatg 3593083  T
Q  96 atgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 195  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  3593084 atgaatagagactctccccttacctctagtttgccgaattgatgatttcctacggagaaatctctccatag-gttattctcgctattcctccttgcctct 3593182  T
Q  196 tctctccacaacc 208  Q
    |||||||||||||    
T  3593183 tctctccacaacc 3593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 15777425 - 15777308
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 191  Q
    ||||||||||| | |||||| |||||||||||||||||  || |||| | ||||||||||||||||||||  ||| ||  ||||||||||||||| ||||    
T  15777425 tatgatgaataaa-actccc-ccttacctctagtttgcaaaagtgataaattcctacggtgaaatctctctctaggttc-ttctcgctattcctctttgc 15777329  T
Q  192 ctcttctctccacaaccctag 212  Q
    || ||||||||| ||||||||    
T  15777328 ctattctctccataaccctag 15777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 24178036 - 24177968
Alignment:
Q  20 ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 88  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||    
T  24178036 ggacacgaatataacatgaattcattaaaagatcatgaaaaacaatggaaaataaaaacccttcactac 24177968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 32657373 - 32657336
Alignment:
Q  23 cacaaatttaacatgaattcattaaaagatcatgaaaa 60  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32657373 cacaaatttaacatgaattcattaaaagatcatgaaaa 32657336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 6460042 - 6460118
Alignment:
Q  134 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacccta 211  Q
    |||||||  ||||||| |||||||||||  |||||   |||||| ||| |||||||||||||||||||||||||||||    
T  6460042 ttgatgaaatcctacgatgaaatctctctctagatcc-ttctcgttatgcctccttgcctcttctctccacaacccta 6460118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 9733668 - 9733591
Alignment:
Q  134 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 212  Q
    ||||||| ||||||| ||||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  9733668 ttgatgaattcctactgtgaaatctctctctagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 9733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 18534506 - 18534437
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 161  Q
    |||| ||||||||||||||| |||||||||||||||  |||| |||||||||||||| |||  ||||||||    
T  18534506 tatggtgaatagagactccc-ccttacctctagttttgcgaaattgatgatttcctatggttgaatctctc 18534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 30993323 - 30993253
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 161  Q
    |||| ||||||||||||||| ||||||||||||||||  ||| ||||||| ||| ||| ||||| ||||||    
T  30993323 tatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc 30993253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 32658589 - 32658622
Alignment:
Q  27 aatttaacatgaattcattaaaagatcatgaaaa 60  Q
    ||||||| ||||||||||||||||||||||||||    
T  32658589 aatttaaaatgaattcattaaaagatcatgaaaa 32658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 23974129 - 23974249
Alignment:
Q  92 tatgatgaatagagactccctcc-ttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 190  Q
    ||||||||||| | |||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||  |||  || ||||||||||||||| |||    
T  23974129 tatgatgaataaaaactccccccattacctctagtttgcagaattgatgatttcctacggtgaaatctttctctag-gttcttctcgctattcctctttg 23974227  T
Q  191 cctcttctctccacaaccctag 212  Q
     |||||||||||| ||||||||    
T  23974228 tctcttctctccataaccctag 23974249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 19612003 - 19611888
Alignment:
Q  97 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 195  Q
    ||||||||||||||| || |||||||| |||  |||| ||||||||| |||||| |||||||||||  ||| ||  |||||||||| |||||||||||||    
T  19612003 tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgatgaaatctctctctaggttc-ttctcgctatccctccttgcctct 19611905  T
Q  196 tctctccacaaccctag 212  Q
    |||| ||||||||||||    
T  19611904 tctccccacaaccctag 19611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 25126318 - 25126202
Alignment:
Q  96 atgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctc 194  Q
    |||||||||||||||| || ||||||||||||  |||| |||||||||||||||| | |||| ||||  ||| ||  ||||||||||||||| |||||||    
T  25126318 atgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttc-ttctcgctattcctctttgcctc 25126220  T
Q  195 ttctctccacaaccctag 212  Q
    ||||| ||| ||||||||    
T  25126219 ttctcaccataaccctag 25126202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 15706694 - 15706808
Alignment:
Q  97 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 195  Q
    ||||||||||||||| | |||||||||||||  |||| ||||||||||| |||| ||||||||| |  ||||||  ||||||||||||||| ||| || |    
T  15706694 tgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccctttagattc-ttctcgctattcctctttgtctat 15706792  T
Q  196 tctctccacaacccta 211  Q
    |||||||| |||||||    
T  15706793 tctctccataacccta 15706808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 11153820 - 11153890
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 161  Q
    |||||||||||||||||||| | |||||||||||| |  ||| ||||||| ||| ||||||||||||||||    
T  11153820 tatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctc 11153890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 14645763 - 14645810
Alignment:
Q  97 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 145  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  14645763 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 14645810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 18552479 - 18552412
Alignment:
Q  27 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactacacgtatg 95  Q
    |||| ||||||||||| |||||||| |||| |||||||| ||||||| | |||||||||||| ||||||    
T  18552479 aattaaacatgaattcgttaaaagaacatgcaaaacaatataaaaca-acactcttcactacccgtatg 18552412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 9548761 - 9548880
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagttt--gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 189  Q
    ||||||||| |||||||||| ||||| |||||||||  ||  ||||||||||||||||||||||||||||||  ||  ||| |||||||||| |||||||    
T  9548761 tatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacggtgaaatctctc--tacgttt-ttctcgctatgcctcctt 9548857  T
Q  190 gcctcttctctccacaaccctag 212  Q
    | |||||||||||||||||||||    
T  9548858 gtctcttctctccacaaccctag 9548880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 19769117 - 19769046
Alignment:
Q  92 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 161  Q
    |||||||||||||||||||| || |||||||||||| |  ||||| ||||| ||||||||||||||||||||    
T  19769117 tatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctc 19769046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 1859 - 1921
Alignment:
Q  99 aatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 161  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  1859 aatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctctc 1921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 35571 - 35456
Alignment:
Q  97 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 195  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||  ||   ||  ||| ||||| ||| ||||||| |    
T  35571 tgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctcta-cgttcctcttgctatgccttcttgccttt 35473  T
Q  196 tctctccacaaccctag 212  Q
    |||||||||||||||||    
T  35472 tctctccacaaccctag 35456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 17290631 - 17290751
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 190  Q
    |||| ||||||||||||||| ||||||||||| |||   ||| ||||| ||||| |||||| |||||||||  ||| ||  |||||| ||||||||||||    
T  17290631 tatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctctctctaggttc-ttctcgttattcctccttg 17290729  T
Q  191 cctcttctctccacaaccctag 212  Q
     |||||||||||||||||||||    
T  17290730 tctcttctctccacaaccctag 17290751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 42147378 - 42147446
Alignment:
Q  20 ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 88  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||  |||||||||    
T  42147378 ggacacgaatgtaacatgaattcattaaaagatcatgaaaaacaatgaaaaataaaaaaccttcactac 42147446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 48262 - 48321
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 151  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  48262 tatggtgaatagagactccccccttacctctagttttccgaattgatgaattcctacggt 48321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 32945355 - 32945463
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 190  Q
    ||||||||||| | |||||| |||||||||||||||  |||| |||||||||||||||| ||||||||||| |   | || |||| |||||||||| |||    
T  32945355 tatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctcta---agttcttctggctattcctctttg 32945450  T
Q  191 cctcttctctcca 203  Q
    |||||||||||||    
T  32945451 cctcttctctcca 32945463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 3310877 - 3311014
Alignment:
Q  26 aaatttaacatgaattcattaaaagatcatgaaaaaca--atgtaaaacacaaactcttca--ctacacgtatgatgaatagagactccctccttacctc 121  Q
    ||||||||||| |||||||||||||||| ||||||  |  | | ||||||||||| |||||  | || | ||| |||||||||||||||| |||||||||    
T  3310877 aaatttaacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcatacaacccttat-atgaatagagactccc-ccttacctc 3310974  T
Q  122 tagtttgccgaattgatgatttcctacggtgaaatctctc 161  Q
    ||||||| ||||||||||| ||||||| ||  ||||||||    
T  3310975 tagtttgtcgaattgatgacttcctactgttgaatctctc 3311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 3312651 - 3312715
Alignment:
Q  96 atgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 161  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  3312651 atgaatagagactccc-ccttatctctagtttgccgaattgatgacttcctacggttgaatctctc 3312715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 21859885 - 21859820
Alignment:
Q  22 acacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 88  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||  ||||| ||||||||||||||    
T  21859885 acacaaatttaacacaaattcattaaaaaatcatgaaaaacaatg-gaaacaaaaactcttcactac 21859820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 18147691 - 18147571
Alignment:
Q  92 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 189  Q
    |||||||||||||||||||| || |||||||||||| |  ||| ||||||| ||||||||| ||||||||||  |||| || |||||| | | ||| |||    
T  18147691 tatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctaga-ttcttctcggtgtgcct-ctt 18147594  T
Q  190 gcctcttctctccacaaccctag 212  Q
    | ||||| |||||||||||||||    
T  18147593 gactcttttctccacaaccctag 18147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 13695873 - 13695920
Alignment:
Q  104 agactccctccttacctctagtttgccgaattgatgatttcctacggt 151  Q
    |||||| | |||||||||||||||||||||||||||| || |||||||    
T  13695873 agactctccccttacctctagtttgccgaattgatgaatttctacggt 13695920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 13696071 - 13696128
Alignment:
Q  94 tgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 151  Q
    ||||||| | |||||| | |||| ||||||||||||||||||||||| || |||||||    
T  13696071 tgatgaagatagactctccccttccctctagtttgccgaattgatgaatttctacggt 13696128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 12786243 - 12786364
Alignment:
Q  92 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 189  Q
    |||||||||||||||||||| || ||||||||||||||  ||||| ||||| ||||||||||||||||||||   ||  || ||||  |||| || ||||    
T  12786243 tatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctcttcag-gttcttctttctatgccacctt 12786341  T
Q  190 gcctcttctctccacaaccctag 212  Q
    |||| ||||||||||||||||||    
T  12786342 gccttttctctccacaaccctag 12786364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 18513906 - 18513786
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 190  Q
    |||| |||||||||||| || |||||||| ||||||  |||| |||||||||||||| | | |||||||||  ||| ||  ||||| ||||||||| | |    
T  18513906 tatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttc-ttctcactattcctcttgg 18513808  T
Q  191 cctcttctctccacaaccctag 212  Q
    ||||||||||||| ||||||||    
T  18513807 cctcttctctccataaccctag 18513786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 23632244 - 23632181
Alignment:
Q  99 aatagagactccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 161  Q
    |||||| |||||| |||||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  23632244 aatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctc 23632181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 9131772 - 9131648
Alignment:
Q  87 acacgtatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcct 185  Q
    |||| |||| |||||||||||||| |||||||||| |||||  |||| |||||||||||||||    |||||||||  ||||||  |||| |||||||||    
T  9131772 acacttatggtgaatagagactcc-tccttacctcgagttttgcgaaattgatgatttcctacaacaaaatctctctttagattc-ttcttgctattcct 9131675  T
Q  186 ccttgcctcttctctccacaaccctag 212  Q
    | || | ||||||||||| ||||||||    
T  9131674 ctttacttcttctctccataaccctag 9131648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 18513992 - 18513958
Alignment:
Q  26 aaatttaacatgaattcattaaaagatcatgaaaa 60  Q
    |||||||||||||||| ||||||||||||||||||    
T  18513992 aaatttaacatgaatttattaaaagatcatgaaaa 18513958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 182966 - 183070
Alignment:
Q  108 tccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaa 206  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||   ||   ||  |||| |||| ||||||||||||||||||||||||    
T  182966 tccccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatcta-cgttcctctccctatgcctccttgcctcttctctccacaa 183064  T
Q  207 ccctag 212  Q
    ||||||    
T  183065 ccctag 183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 39436043 - 39435924
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 190  Q
    |||| ||||||||||||||| |||||||||||||||   ||| ||||||||||||||||||||||||||||  |||| || ||||  |||| ||| ||||    
T  39436043 tatggtgaatagagactccc-ccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttaga-ttcttcttactatgccttcttg 39435946  T
Q  191 cctcttctctccacaaccctag 212  Q
    | ||||||||||| || |||||    
T  39435945 catcttctctccaaaatcctag 39435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 39176448 - 39176520
Alignment:
Q  92 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctcc 162  Q
    ||||||||||||||||| || || |||||||||||||  |||| |||||||||| ||| ||||||||||||||    
T  39176448 tatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctcc 39176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 16093532 - 16093651
Alignment:
Q  92 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 191  Q
    |||| |||||||||||||||  ||||||||||||||||  || |||||| || |||| ||||||||||||  |||  ||  ||||||||||| || ||||    
T  16093532 tatggtgaatagagactcccctcttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctag-gttcctctcgctattcatctttgc 16093630  T
Q  192 ctcttctctccacaaccctag 212  Q
    || ||||||||| ||||||||    
T  16093631 cttttctctccataaccctag 16093651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 27387002 - 27386908
Alignment:
Q  114 cttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacc 208  Q
    ||||||||||||||  |||| || ||||||| |||||||||||||||||  ||| ||  ||||||| || ||||||||||||||||||||||||||    
T  27387002 cttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttc-ttctcgccatgcctccttgcctcttctctccacaacc 27386908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 32623664 - 32623568
Alignment:
Q  116 tacctctagttt-gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 212  Q
    |||||||||||| ||  |||||||||||| |||||||||||||||||  |||| || |||||| |||||||| ||||||||||  |||| ||||||||    
T  32623664 tacctctagttttgcaaaattgatgattttctacggtgaaatctctctctaga-ttcttctcgttattcctctttgcctcttcattccataaccctag 32623568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 16093423 - 16093466
Alignment:
Q  22 acacaaatttaacatgaattcattaaaagatcatgaaaaacaat 65  Q
    |||| |||||||||||  ||||||||||||||||||||||||||    
T  16093423 acacgaatttaacatggtttcattaaaagatcatgaaaaacaat 16093466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 20180863 - 20180923
Alignment:
Q  27 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 88  Q
    ||||||||||||||||||||||| |||||||||  ||||  |||||| || |||||||||||    
T  20180863 aatttaacatgaattcattaaaa-atcatgaaacccaatagaaaacaaaagctcttcactac 20180923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 20263751 - 20263671
Alignment:
Q  132 aattgatgatttcctacggt-gaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 212  Q
    ||||||||| |||||||||| ||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  20263751 aattgatgaattcctacggtagaaatctctctttagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 20263671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 171527 - 171480
Alignment:
Q  97 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 145  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  171527 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 1279 - 1311
Alignment:
Q  33 acatgaattcattaaaagatcatgaaaaacaat 65  Q
    |||| ||||||||||||||||||||||||||||    
T  1279 acattaattcattaaaagatcatgaaaaacaat 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University