View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15361_low_1 (Length: 798)
Name: NF15361_low_1
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_low_1 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 1 - 791
Target Start/End: Original strand, 2461540 - 2462330
Alignment:
| Q |
1 |
acaaagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagctaagaaaatcacaaacaggtaataatgctgaatgcattaatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2461540 |
acaaagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagctaaagaaatcacaaacaggtaataatgctgaatgcattaatttt |
2461639 |
T |
|
| Q |
101 |
gaagaagaaaaattttcagcaactcaaaggattccaagaggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagcacttaatgaag |
200 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461640 |
gaagaagaaaaattttcagcatctcaaagaattccaagaggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagcacttaatgaag |
2461739 |
T |
|
| Q |
201 |
cactttcaccacaaaaattatctcctaacttttctacttcaaaccctacaaatagtaactcattttcttccactaaagaaccaggtcaatcgttttgcta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461740 |
cactttcaccacaaaaattatctcctaacttttctacttcaaaccctacaaatagtaactcattttcttccactaaagaaccaggtcaatcgttttgcta |
2461839 |
T |
|
| Q |
301 |
tgcttcaagtgcagataacatagcgcgtttattaaagggttggatgaaaaatccgattaaatcatcggtaagtactaattcagctgtgacacaaaattcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2461840 |
tgcttcaagtgcagataacatagcgcgtttattaaagggttggatgaaaaatccgattaaatcatcggtaagtactaattcagttgtgacacaaaattcc |
2461939 |
T |
|
| Q |
401 |
ttcaacaactttgattctgcttctagtagtggaacaaagggtgaaatattgtctgaaacatttgaatctttgtttggttttgagcctttagagtctttgg |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461940 |
ttcaacaactttgattctgcttctagtagtggaacaaagggtgaaatattgtctgaaacatttgaatctttgtttggttttgagcctttagagtctttgg |
2462039 |
T |
|
| Q |
501 |
agtcatcgaattctgaattttctcatcagtctttgtcaccagacgcaacgattttacaagatgaaagtaagcctgatgttggttcggaaacaatgccctt |
600 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2462040 |
agtcatcgaattctgaattttctcatcagtctttgtcaccagacgcaacgattttacaagatgaaagtaagcctgatgttggttcagaaacaatgccctt |
2462139 |
T |
|
| Q |
601 |
ttctttgcttgagaaatggcttcttgatgaagcaagttgtcctgaaaaagtattaggttgtggtggtgatcatgctcaagttttctaaactggtttaggt |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462140 |
ttctttgcttgagaaatggcttcttgatgaagcaagttgtcctgaaaaagtattaggttgtggtggtgatcatgctcaagttttctaaactggtttaggt |
2462239 |
T |
|
| Q |
701 |
tttaatctgcattttcggtttagataaagctatgaatctttatattgcgcggtgcaatactagcaaagctgaaatgtggttgtgatgatgt |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2462240 |
tttaatctgcattttcggtttagataaagctatgaatctttatattgcgcggtgcaatactagcaaagctgaaatgtggttgtgatgatgt |
2462330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 3617118 - 3617182
Alignment:
| Q |
137 |
agaggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagcacttaatgaagc |
201 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
3617118 |
agaggacaatgggaaagaagacttcaaactgatattcacatggccaaaaaagcacttagtgaagc |
3617182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3616985 - 3617041
Alignment:
| Q |
1 |
acaaagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagct |
57 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||| ||||||| || ||||| |
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| T |
3616985 |
acaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagct |
3617041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 3617295 - 3617348
Alignment:
| Q |
299 |
tatgcttcaagtgcagataacatagcgcgtttattaaagggttggatgaaaaat |
352 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| || || ||||||||||||||| |
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| T |
3617295 |
tatgcatcaagtgctgataacatagctcgtttgttgaaaggttggatgaaaaat |
3617348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 10182 - 10132
Alignment:
| Q |
139 |
aggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagc |
189 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||| |||| |
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| T |
10182 |
aggtcaatgggaaagaaggctacaaacagatattcatatggccaaacaagc |
10132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 10846 - 10896
Alignment:
| Q |
139 |
aggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagc |
189 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||| |||| |
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| T |
10846 |
aggtcaatgggaaagaaggctacaaacagatattcatatggccaaacaagc |
10896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 55166139 - 55166086
Alignment:
| Q |
4 |
aagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagct |
57 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| |
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|
| T |
55166139 |
aagaacagataatgagataaaaaattattggaatacacatttaagaaagaagct |
55166086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 13993420 - 13993376
Alignment:
| Q |
3 |
aaagaacagataatgacataaaaaactattggaatactcatttga |
47 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| ||||||| |
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|
| T |
13993420 |
aaagaacagacaatgacatcaaaaactattggaatacacatttga |
13993376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 13993302 - 13993252
Alignment:
| Q |
139 |
aggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaagc |
189 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||| ||| |||| |
|
|
| T |
13993302 |
aggtcaatgggagagaagacttcaaacagatatccatatggcaaaacaagc |
13993252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 4686121 - 4686174
Alignment:
| Q |
4 |
aagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagct |
57 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
4686121 |
aagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagct |
4686174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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