View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15361_low_13 (Length: 226)

Name: NF15361_low_13
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15361_low_13
NF15361_low_13
[»] chr1 (1 HSPs)
chr1 (12-100)||(36676084-36676172)
[»] chr8 (4 HSPs)
chr8 (138-205)||(6579297-6579364)
chr8 (138-205)||(27268120-27268187)
chr8 (139-205)||(27005048-27005114)
chr8 (138-205)||(12664010-12664077)
[»] chr4 (3 HSPs)
chr4 (138-205)||(29710944-29711011)
chr4 (138-205)||(1690262-1690329)
chr4 (139-195)||(35536139-35536195)
[»] chr6 (1 HSPs)
chr6 (153-205)||(16484281-16484333)
[»] chr5 (1 HSPs)
chr5 (153-205)||(21818577-21818629)
[»] scaffold0194 (1 HSPs)
scaffold0194 (52-85)||(26548-26581)
[»] chr7 (1 HSPs)
chr7 (28-88)||(46922039-46922099)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 36676084 - 36676172
Alignment:
Q  12 aagaatatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgcattcaccaacaac 100  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36676084 aagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgcattcaccaacaac 36676172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 6579297 - 6579364
Alignment:
Q  138 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttca 6579364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 27268187 - 27268120
Alignment:
Q  138 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttca 27268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27005048 - 27005114
Alignment:
Q  139 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttca 27005114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 12664010 - 12664077
Alignment:
Q  138 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttca 12664077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 29710944 - 29711011
Alignment:
Q  138 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttca 29711011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 1690329 - 1690262
Alignment:
Q  138 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattca 1690262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 35536195 - 35536139
Alignment:
Q  139 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaag 195  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaag 35536139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 16484333 - 16484281
Alignment:
Q  153 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttca 16484281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 21818577 - 21818629
Alignment:
Q  153 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttca 205  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttca 21818629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  52 atagcccctccaattatagaagcttgatcaccct 85  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 46922099 - 46922039
Alignment:
Q  28 tgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 88  Q
    ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922099 tgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University