View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15361_low_5 (Length: 563)
Name: NF15361_low_5
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 99 - 540
Target Start/End: Complemental strand, 10974447 - 10974007
Alignment:
| Q |
99 |
catgattgtgttgaaagcatgttgtcactgttaaataaacgtgcaagatataaataaatccaatttc-cacaacacaagtcaaaggtcaagcacctctcn |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10974447 |
catgattgtgttgaaagcatgttgtcactgttaaataaacgtgcaagatacaaataaatccaatttcacacgacacaagtcaaaggtcaagcacctctca |
10974348 |
T |
|
| Q |
198 |
nnnnnntgaaagtcaaaggtcaagtacattccttcaaaaattttannnnnnnaactcatattgatcctttgtgttcaaatcgttaaacaaacttgtcatg |
297 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974347 |
aaaaaatgaaagtcaaaggtcaagcacattccttcaattttttattttttttaactcat--tgatcctttgtgttcaaatcgttaaacaaacttgtcatg |
10974250 |
T |
|
| Q |
298 |
actacatatgtggctcttacttggagttgacggcaatgaaacatgatgtatagtttatatatacacacataaatttgaagcaattataagaaaaattata |
397 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974249 |
actacatgtgtggctcttacttggagttgacggcaatgaaacatgatgtatagtttatatatacacacataaatttgaagcaattataagaaaaattata |
10974150 |
T |
|
| Q |
398 |
ctataaaccttatgatttggaggaaaaagactttagaaacctttgagtttggacaagatgaaggttttcgagatgcatttcaactactagtttagggtga |
497 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974149 |
ctataaaccctatgatttggaggaaaaagactttagaaacctttgagtttggacaagatgaaggttttcgagatgcatttcaactactagtttagggtga |
10974050 |
T |
|
| Q |
498 |
aagtcatatgagtggtcgcttcatctttcaccaatgatgttga |
540 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10974049 |
aagtcatatgagaggtcgcttcatctttcaccaatgatgttga |
10974007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 10974504 - 10974472
Alignment:
| Q |
42 |
caaaggaaaaaacacgcttaagttacatagcag |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10974504 |
caaaggaaaaaacacgcttaagttacatagcag |
10974472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 40191049 - 40190997
Alignment:
| Q |
457 |
gaaggttttcgagatgcatttcaactactagtttagggtgaaagtcatatgag |
509 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
40191049 |
gaaggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgag |
40190997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University