View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15361_low_7 (Length: 454)
Name: NF15361_low_7
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_low_7 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 40466027 - 40465573
Alignment:
| Q |
1 |
ttatatactctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtatttggttcacctatatac-------ataatatggtgtttagttc |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
40466027 |
ttatatactctctgtaacaaaatataagtaaaagcgagtcaaagaaatttgacgtatttgtttcacctatatacctatgatataatatggtgtttagttc |
40465928 |
T |
|
| Q |
94 |
taaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagct |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465927 |
taaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagct |
40465828 |
T |
|
| Q |
194 |
gtttatgatggtggtcgacatgtaattgggtaagccaagagcttcatattcttatttttaaagctatttgtttgtatttacggaaaccctagcataatca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465827 |
gtttatgatggtggtcgacatgtaattgggtaag-caagagcttca---tcttctttttaaagctatttgtttgtatttacggaaaccctagcataatca |
40465732 |
T |
|
| Q |
294 |
cattgtgtcaccgtgatattgtcaaattttttcgtgattctaaaatgcacgactgctttatatttagttaaattcaactaacnnnnnnnnnnnnnnnnnn |
393 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
40465731 |
cattgtgtcaccgtgatattgtcaaa-tttttcgtgattctaaaatgcacgactgctatatatttagttaaactcaactaacttttgttttgtttttgtt |
40465633 |
T |
|
| Q |
394 |
nncagagtgattcccaaaacactaatgccaagagaggtaaagttatgcaactttggaagc |
453 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465632 |
ttcagagtgattccgaaaacactaatgccaagagaggtaaagttatgcaactttggaagc |
40465573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 21625299 - 21625405
Alignment:
| Q |
118 |
taaaaaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgta |
217 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
21625299 |
taaaaaggtgtcaagaaatattgatttggtttatggaggaggcagcattggtttgatggggttggtttctcaagctgtttctgatggaggtcgacatgtg |
21625398 |
T |
|
| Q |
218 |
attgggt |
224 |
Q |
| |
|
||||||| |
|
|
| T |
21625399 |
attgggt |
21625405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 28271509 - 28271406
Alignment:
| Q |
122 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||| ||| |||| ||||||||| |||||||||| ||||||| || | |
|
|
| T |
28271509 |
aaggtgtcaagaaatattgatctagtttatggaggaggaagcattggtctaatgggtttggtttcacaagctgttcatgatggtggaagacatgtcatag |
28271410 |
T |
|
| Q |
222 |
ggta |
225 |
Q |
| |
|
|||| |
|
|
| T |
28271409 |
ggta |
28271406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 77216 - 77319
Alignment:
| Q |
122 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
221 |
Q |
| |
|
||||| ||||| || ||||| || || ||||||||||| ||||||||| | ||||| || |||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
77216 |
aaggtttcaaggaacattgatcttgtgtatggaggaggaagcattggtctcatgggtttagtttctcaagctgttcatgatggtggtcgccatgtcattg |
77315 |
T |
|
| Q |
222 |
ggta |
225 |
Q |
| |
|
|||| |
|
|
| T |
77316 |
ggta |
77319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 40889068 - 40888965
Alignment:
| Q |
122 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
221 |
Q |
| |
|
||||| ||||| || ||||| || || ||||||||||| ||||||||| | ||||| || |||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
40889068 |
aaggtttcaaggaacattgatcttgtgtatggaggaggaagcattggtctcatgggtttagtttctcaagctgttcatgatggtggtcgccatgtcattg |
40888969 |
T |
|
| Q |
222 |
ggta |
225 |
Q |
| |
|
|||| |
|
|
| T |
40888968 |
ggta |
40888965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 38462751 - 38462800
Alignment:
| Q |
10 |
ctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtattt |
59 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||||| |||| |||||| |
|
|
| T |
38462751 |
ctctgtaacaaaatataagcaaaagcgagtcaaagaaagttgaggtattt |
38462800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University