View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15361_low_8 (Length: 437)
Name: NF15361_low_8
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 34194383 - 34193972
Alignment:
| Q |
7 |
tcgaagaatatgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
106 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194383 |
tcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
34194284 |
T |
|
| Q |
107 |
taacattttggatgtcagaaaattaccctctggaggacaagacctttacataagagttgcagcttcagaattaggtattaaactgctaatatttttattc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194283 |
taacattttggatgtcagaaaattaccctctggaggacaagacctttacataagagttgcagcttcagaattaggtattaaactgctaatatttttattc |
34194184 |
T |
|
| Q |
207 |
catttaatattctgatgatgtggcattgaactcattctaagcctaatttgttcaatattagttattatacagagaaatccatggctgcatgtaattatta |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194183 |
catttaatattctgatgatgtggcattcaactcattctaagcctaatttgttcaatattagttattatacagagaaatccatggctgcatgtaattattg |
34194084 |
T |
|
| Q |
307 |
ttataaatttttgacagtgaagtgctttttgatgttaactattggaattcttacctgctcaaaactttggtgtgttaactaacacttcttttaatctatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194083 |
ttataaatttttgacagtgaagtgctttttgatgttaactattggaattcttacctgctcaaaactttggtgtgttaactaacacttcttttaatctatc |
34193984 |
T |
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| Q |
407 |
agaccatagcac |
418 |
Q |
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|||||||||||| |
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| T |
34193983 |
agaccatagcac |
34193972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 34217193 - 34217360
Alignment:
| Q |
7 |
tcgaagaatatgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
106 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217193 |
tcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
34217292 |
T |
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| Q |
107 |
taacattttggatgtcagaaaattaccctctggaggacaagacctttacataagagttgcagcttcag |
174 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
34217293 |
taacattttggatgtcagaaaattaccctctggagggcaagacctttacataagagttgcagattcag |
34217360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 34205795 - 34205943
Alignment:
| Q |
34 |
gaaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattacc |
133 |
Q |
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|||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||| | |||| || |||| ||| |
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| T |
34205795 |
gaaactgtaattgcacagcatatgcaagtttagatgtcagagatggtggaagtggttgcatactttggtttaataacattcttgatgccaaaaaactacg |
34205894 |
T |
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| Q |
134 |
ctctggaggacaagacctttacataagagttgcagcttcagaattaggt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34205895 |
tgctggaggacaagacctttacataagagttgcagcttcagaactaggt |
34205943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 5525951 - 5525872
Alignment:
| Q |
39 |
tgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
118 |
Q |
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|||||||| || ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
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| T |
5525951 |
tgttcttgcactgcatatgcaaattcagatgtcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5525872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 5848851 - 5848934
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
118 |
Q |
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|
||||||| |||| || |||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
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| T |
5848851 |
aaactgtacttgcactgcatatgcaaatttagatatcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5848934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 5484911 - 5484842
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggttt |
104 |
Q |
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| T |
5484911 |
aaactgttcttgcactgcatatgcaaatttagatatcagagatggtgggagtggctgcttactttggttt |
5484842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 5503118 - 5503040
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
113 |
Q |
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|
|||||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||| | |||||| |
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| T |
5503118 |
aaactgttcttgcactgcatatgcaaattcagatatcagagatggtgggagtggctgcttactttggtttgacaacatt |
5503040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 5854152 - 5854230
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
113 |
Q |
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|||||||||||| || |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| | |||||| |
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| T |
5854152 |
aaactgttcttgcactgcatatgcaaatttagatatcagatatgttggaagtggctgcttactttggtttgacaacatt |
5854230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 5802454 - 5802525
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
106 |
Q |
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|||||||||||| || ||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||||| |
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| T |
5802454 |
aaactgttcttgcaccgcatatgcaaattcagatatcagggatggtggtagtggctgcttactttggtttaa |
5802525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 5490305 - 5490222
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
118 |
Q |
| |
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||||||| |||| || ||||||||||||| |||| ||| ||||||||| ||||||||| | ||||||||||| |||||| |||| |
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| T |
5490305 |
aaactgtacttgcactgcatatgcaaattcagatatcaaagatggtgggagtggctgcatactttggtttaacaacattgtgga |
5490222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 5828122 - 5828193
Alignment:
| Q |
35 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
106 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
5828122 |
aaactgttcttgcattgcatatgcaaattctgatatcagagatggtgggagtggctgcttactttggtttaa |
5828193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 20343732 - 20343665
Alignment:
| Q |
51 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| | || |||||||| |
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| T |
20343732 |
gcatatgcaaatttagatatcagagatggtgggagtggttgcttactttggtttgacaatattttgga |
20343665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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