View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15361_low_9 (Length: 389)
Name: NF15361_low_9
Description: NF15361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15361_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 23808022 - 23807670
Alignment:
| Q |
15 |
cacagattagagagttagtgatgattgagttagttattttggtcttttctatctctttgccacatgtcctatgagcttaccgatagttagaattcttaac |
114 |
Q |
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| T |
23808022 |
cacagattagagagttagtgatgattgagttagttattttggtcttttctatctctttgccacatgtcctatgagcttaccgatagttagaattcttaac |
23807923 |
T |
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| Q |
115 |
caactaatcgtagctctataaatcattgtcatcgttttcttcttcaatgagaattaaattttttcattcattcatgaagttcttgattgatatgcaattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23807922 |
caactaatcgtagctctataaatcattgtcatcgttttcttcttcaatgagaattaaattttttcattcattcatgaaattcttgattgatatgcaattt |
23807823 |
T |
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| Q |
215 |
actcatatggtatcatctagtctggtttgattcaatctatggaagcaaaattttgagaatttctttcaagattctcgatcaagatggcnnnnnnnnnnnn |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23807822 |
actcatatggtatcatctagtctggtttgattcaatctatggaagcaaaattttgagaatttctttcaagattctcgatcaagatggcaaaaaaaaataa |
23807723 |
T |
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| Q |
315 |
nnnncaatgcatcatttaacaacaacggagacaatttgaatgtggatgtaacattgg |
371 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23807722 |
a----aaatcatcatttaacaacaacggagacaatttgaatgtggatgtaacattgg |
23807670 |
T |
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