View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15362_low_1 (Length: 625)

Name: NF15362_low_1
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15362_low_1
NF15362_low_1
[»] chr6 (7 HSPs)
chr6 (17-319)||(6256752-6257036)
chr6 (414-611)||(6257130-6257327)
chr6 (520-611)||(29032706-29032795)
chr6 (520-562)||(8210018-8210060)
chr6 (520-612)||(3709500-3709592)
chr6 (520-570)||(3008833-3008883)
chr6 (527-563)||(30892320-30892356)
[»] chr3 (5 HSPs)
chr3 (495-611)||(28421093-28421208)
chr3 (522-589)||(24405049-24405116)
chr3 (527-563)||(47005838-47005874)
chr3 (527-592)||(17768056-17768121)
chr3 (527-592)||(19069357-19069422)
[»] chr7 (8 HSPs)
chr7 (520-588)||(27900310-27900379)
chr7 (520-589)||(10623358-10623423)
chr7 (520-611)||(28302106-28302195)
chr7 (527-563)||(46611515-46611551)
chr7 (520-571)||(10019740-10019791)
chr7 (527-588)||(16994493-16994555)
chr7 (522-588)||(28002651-28002719)
chr7 (527-559)||(20118263-20118295)
[»] chr4 (19 HSPs)
chr4 (520-589)||(1745443-1745512)
chr4 (419-487)||(9323675-9323743)
chr4 (419-487)||(9378154-9378222)
chr4 (520-587)||(38011634-38011702)
chr4 (522-587)||(20650003-20650069)
chr4 (528-593)||(21481123-21481189)
chr4 (153-247)||(37861163-37861257)
chr4 (527-589)||(44311814-44311876)
chr4 (532-588)||(29847903-29847960)
chr4 (520-584)||(35260214-35260279)
chr4 (416-508)||(41839815-41839907)
chr4 (527-563)||(41839739-41839775)
chr4 (495-562)||(44136799-44136860)
chr4 (527-563)||(44206998-44207034)
chr4 (153-247)||(46963915-46964009)
chr4 (527-571)||(2815079-2815123)
chr4 (520-568)||(18402877-18402925)
chr4 (522-562)||(30257441-30257481)
chr4 (527-563)||(53813909-53813945)
[»] chr2 (15 HSPs)
chr2 (522-589)||(5136197-5136264)
chr2 (522-589)||(18482082-18482149)
chr2 (520-589)||(39228906-39228976)
chr2 (520-588)||(12419510-12419579)
chr2 (520-588)||(12431570-12431639)
chr2 (527-563)||(9848124-9848160)
chr2 (520-559)||(38002028-38002067)
chr2 (520-588)||(4730707-4730776)
chr2 (522-562)||(20105360-20105400)
chr2 (527-563)||(36254598-36254634)
chr2 (147-257)||(5577961-5578071)
chr2 (153-234)||(26009656-26009737)
chr2 (529-562)||(27185801-27185834)
chr2 (529-562)||(27835343-27835376)
chr2 (149-257)||(34074119-34074227)
[»] chr8 (11 HSPs)
chr8 (548-611)||(33525580-33525642)
chr8 (520-571)||(1029727-1029778)
chr8 (522-587)||(11954570-11954636)
chr8 (527-563)||(10659194-10659230)
chr8 (520-571)||(41566189-41566240)
chr8 (527-563)||(14442608-14442644)
chr8 (150-257)||(7637573-7637680)
chr8 (419-505)||(10659270-10659355)
chr8 (540-593)||(38731816-38731870)
chr8 (154-236)||(39699420-39699501)
chr8 (527-563)||(41940095-41940131)
[»] chr1 (17 HSPs)
chr1 (520-586)||(48563262-48563329)
chr1 (529-588)||(14167947-14168007)
chr1 (527-563)||(26925117-26925153)
chr1 (527-563)||(33323910-33323946)
chr1 (527-563)||(50959522-50959558)
chr1 (148-243)||(34462717-34462812)
chr1 (148-257)||(1640228-1640337)
chr1 (527-559)||(16256488-16256520)
chr1 (527-563)||(18628966-18629002)
chr1 (527-563)||(23777055-23777091)
chr1 (520-589)||(2688417-2688487)
chr1 (522-592)||(16219131-16219201)
chr1 (153-247)||(18919258-18919352)
chr1 (521-559)||(27901223-27901261)
chr1 (522-571)||(52148831-52148880)
chr1 (527-563)||(8326997-8327033)
chr1 (527-559)||(15394655-15394687)
[»] scaffold0914 (1 HSPs)
scaffold0914 (524-572)||(795-843)
[»] scaffold0003 (1 HSPs)
scaffold0003 (524-562)||(353236-353274)
[»] chr5 (5 HSPs)
chr5 (520-575)||(18274034-18274089)
chr5 (148-246)||(30208-30306)
chr5 (152-257)||(5736036-5736141)
chr5 (527-563)||(12566925-12566961)
chr5 (522-562)||(24099440-24099480)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 6256752 - 6257036
Alignment:
Q  17 acgtggaaggtgatgtggacctacacatcaacatttaacaatgcaagtccatgtgcctaacggatggacttggcaatgagatttatttgatagacgtgaa 116  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||                  ||||||||||||||||||||||||||||||    
T  6256752 acgtggaaggtgatgtggaccgacacatcaacatttaacagtgcaagtccat------------------tggcaatgagatttatttgatagacgtgaa 6256833  T
Q  117 gtaaatcaagggatgaattgcctattttgaaaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6256834 gtaaatcaagggatgaattgcctattttgaaaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaacttaatttgtgaa 6256933  T
Q  217 attgtacattcaatgtcttggaaggttaaaaccatatttttggatttaatctgttttcaattcacaccagtagtgaaggagtgtgttgttgtcgtcgtaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  6256934 attgtacattcaatgtcttggaaggttaaaaccatatttttggatttaatctgttttcaattcacaccaatagtgaaggagtgtgttgttgttgtcgtaa 6257033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 414 - 611
Target Start/End: Original strand, 6257130 - 6257327
Alignment:
Q  414 attcatagactggtgggtttagatttgacctttttgccgtggaatgttttgtaaagccgaaagggtttggtgtgattcaaaaacccgaaagggtccggtt 513  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||    
T  6257130 attcatagactggtgggtttagatttgacctttttgccattgaatgtttcgtaaagccgaaagggtttggtgtgattcaaaaacccgaaagggaccagtt 6257229  T
Q  514 actgacactaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgatatttttgattctctgat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  6257230 actgacactaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgattttttcaattctctgat 6257327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 611
Target Start/End: Original strand, 29032706 - 29032795
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgatatttttgattctctgat 611  Q
    |||||| |||||||||||||||||||||||||||||||| | ||  |||  |  |||||||||||||||| |||  ||||||||||||||||    
T  29032706 actaacgtattggactcatccctcgatctgagttcttacacatt--tttatacatgttgtgtttggtggtctgacttttttgattctctgat 29032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 8210018 - 8210060
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  8210018 actaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 612
Target Start/End: Complemental strand, 3709592 - 3709500
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttga-aactgttgtgtttggtggtatgatatttttgattctctgatg 612  Q
    |||||| ||||||||||||||| | || |||||||||||||| |||||||| ||||||| |||||||||||| ||  | ||||||| |||||||    
T  3709592 actaacgtattggactcatcccacaatatgagttcttacgcg-ttgtttgacaactgttatgtttggtggtacgaactctttgattgtctgatg 3709500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 3008883 - 3008833
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttga 570  Q
    |||||| |||| ||||||||| ||||||||||||||||| ||| |||||||    
T  3008883 actaacgtattagactcatccttcgatctgagttcttacacgtatgtttga 3008833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 30892356 - 30892320
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  30892356 tattgaactcatccctcgatctgagtttttacgcgtt 30892320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 495 - 611
Target Start/End: Original strand, 28421093 - 28421208
Alignment:
Q  495 aacccgaaagggtccggttactgacactaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgat 594  Q
    ||||||||||||||  |||| || || | || |||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  28421093 aacccgaaagggtcatgttattgtcattgacgtattggactcatccctcgatttgagttcttacgcgttt-tttcgaactgttgtgtttggtggtatgat 28421191  T
Q  595 atttttgattctctgat 611  Q
     |||| |||||||||||    
T  28421192 tttttcgattctctgat 28421208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 589
Target Start/End: Original strand, 24405049 - 24405116
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    |||| ||||||||||||| |||||||  ||||||||||||| |||| ||||| |||||||||||||||    
T  24405049 taacgtattggactcatctctcgatcatagttcttacgcgtctgttggaaaccgttgtgtttggtggt 24405116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 47005874 - 47005838
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||| ||||||||||||||    
T  47005874 tattggactcatccctcgatcttagttcttacgcgtt 47005838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 17768121 - 17768056
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatg 592  Q
    ||||| ||| ||||||||||||||||||||| |||| | || ||||  ||||||||||||| ||||    
T  17768121 tattgaactaatccctcgatctgagttcttatgcgtcttttggaaatcgttgtgtttggtgatatg 17768056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 19069422 - 19069357
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatg 592  Q
    ||||| ||| ||||||||||||||||||||| |||| | || ||||  ||||||||||||| ||||    
T  19069422 tattgaactaatccctcgatctgagttcttatgcgtcttttggaaatcgttgtgtttggtgatatg 19069357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 588
Target Start/End: Complemental strand, 27900379 - 27900310
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtgg 588  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  27900379 actaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtgg 27900310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 589
Target Start/End: Original strand, 10623358 - 10623423
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||||||||||    ||||||||||||||    
T  10623358 actaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaa----ttgtgtttggtggt 10623423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 611
Target Start/End: Complemental strand, 28302195 - 28302106
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgatatttttgattctctgat 611  Q
    |||||| ||||||||||||||||||||||| |||||||||| | || || ||||   ||||||||||||| ||| || |||| |||||||||    
T  28302195 actaacgtattggactcatccctcgatctgtgttcttacgcatctgattaaaac--atgtgtttggtggtctgacatctttgtttctctgat 28302106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 46611551 - 46611515
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  46611551 tattggactcatccctcgatctgagttcttacgcgtt 46611515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 10019791 - 10019740
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 571  Q
    |||||| |||||||||||||||||||| ||||||||||||||| || |||||    
T  10019791 actaacgtattggactcatccctcgatttgagttcttacgcgtctgattgaa 10019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 16994493 - 16994555
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtgg 588  Q
    |||||||||| ||||| |||||||||||||||| || |||||||| | |||||||||||||||    
T  16994493 tattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtgg 16994555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 28002651 - 28002719
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacg-cgtttgtttgaaact-gttgtgtttggtgg 588  Q
    |||| ||||| |||||||||||||||||||||||||||  || |||||||| || ||||||||||||||    
T  28002651 taacgtattgaactcatccctcgatctgagttcttacgatgtctgtttgaatctcgttgtgtttggtgg 28002719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 559
Target Start/End: Complemental strand, 20118295 - 20118263
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacg 559  Q
    |||||||||||||||||||| ||||||||||||    
T  20118295 tattggactcatccctcgatatgagttcttacg 20118263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 589
Target Start/End: Original strand, 1745443 - 1745512
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    |||||| ||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||    
T  1745443 actaacgtattggactcatccctcaatctgagttcttacgcgtctcttggaaactgttgtgtttggtggt 1745512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 487
Target Start/End: Complemental strand, 9323743 - 9323675
Alignment:
Q  419 tagactggtgggtttagatttgacctttttgccgtggaatgttttgtaaagccgaaagggtttggtgtg 487  Q
    |||||||||||| | ||||||| ||||||||| ||||| || || ||||| ||||||||||||||||||    
T  9323743 tagactggtgggatcagatttgccctttttgcagtggactggttcgtaaacccgaaagggtttggtgtg 9323675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 487
Target Start/End: Complemental strand, 9378222 - 9378154
Alignment:
Q  419 tagactggtgggtttagatttgacctttttgccgtggaatgttttgtaaagccgaaagggtttggtgtg 487  Q
    |||||||||||| | ||||||| ||||||||| ||||| || || ||||| ||||||||||||||||||    
T  9378222 tagactggtgggatcagatttgccctttttgcagtggactggttcgtaaacccgaaagggtttggtgtg 9378154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 587
Target Start/End: Complemental strand, 38011702 - 38011634
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaact-gttgtgtttggtg 587  Q
    |||||| |||||||||||||||||||||||| |||||||| ||  ||||||| || |||||||||||||    
T  38011702 actaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtttggtg 38011634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 20650003 - 20650069
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtg 587  Q
    |||| ||||| ||||||||||| |||||||||||||||| | |||||||||| ||| ||||||||||    
T  20650003 taacgtattgaactcatccctcaatctgagttcttacgcatctgtttgaaacttgtggtgtttggtg 20650069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 593
Target Start/End: Complemental strand, 21481189 - 21481123
Alignment:
Q  528 attggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtggtatga 593  Q
    |||||||||||||||||| ||| ||||||| |||| || ||||||| ||||||| ||||||||||||    
T  21481189 attggactcatccctcgacctgggttcttatgcgtatgattgaaacatgttgtggttggtggtatga 21481123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 37861163 - 37861257
Alignment:
Q  153 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 247  Q
    ||||| ||| ||||||| |||||| |||| ||  |||  |||||||||||| |||||||  |||||||| |||||||||||||| ||| ||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaa 37861257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 589
Target Start/End: Complemental strand, 44311876 - 44311814
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    |||| |||||||| |||||||||||||||||||||| | ||  ||||||||||||| ||||||    
T  44311876 tattagactcatcactcgatctgagttcttacgcgtctcttgaaaactgttgtgttgggtggt 44311814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 29847960 - 29847903
Alignment:
Q  532 gactcatccctcgatctgagttcttacgcgtttg-tttgaaactgttgtgtttggtgg 588  Q
    |||||||||||||||||||||| |||||||| || |||||||| || |||||||||||    
T  29847960 gactcatccctcgatctgagtttttacgcgtctgctttgaaaccgtagtgtttggtgg 29847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 584
Target Start/End: Complemental strand, 35260279 - 35260214
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttg 584  Q
    |||||||||||||| |||||| ||||| |||||||||| |||| |||||||| | |||||||||||    
T  35260279 actaacatattggattcatccatcgatttgagttcttatgcgtatgtttgaatcatgttgtgtttg 35260214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 508
Target Start/End: Complemental strand, 41839907 - 41839815
Alignment:
Q  416 tcatagactggtgggtttagatttgacctttttgccgtggaatgtttt-gtaaagccgaaagggtttggtgtgattcaaaaacccgaaagggtc 508  Q
    ||||||||||||||| || |||||||  ||||||| || || |||||| ||||| ||  |||||||||||||| ||| ||||||||||||||||    
T  41839907 tcatagactggtgggattggatttgatttttttgctgttgagtgttttcgtaaaccctcaagggtttggtgtg-ttctaaaacccgaaagggtc 41839815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 41839775 - 41839739
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||||||||||||||||||||||||||||| |||||    
T  41839775 tattggactcatccctcgatctgagttcttatgcgtt 41839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 44136799 - 44136860
Alignment:
Q  495 aacccgaaagggtccggttactgacactaacatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||||||||||||| ||||||||||       ||||||||||||||||||||| ||||||||||||||    
T  44136799 aacccgaaagggtctggttactgacg------tattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 44207034 - 44206998
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44207034 tattggactcatccatcgatctgagttcttacgcgtt 44206998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 46964009 - 46963915
Alignment:
Q  153 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 247  Q
    ||||| ||| ||||||| |||||| |||| ||  |||  |||||||||||| |||||||  ||||| || |||||||||||||| ||| ||||||    
T  46964009 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaa 46963915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 571
Target Start/End: Complemental strand, 2815123 - 2815079
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtttgtttgaa 571  Q
    ||||||||||||||  |||| ||||||||||||||| ||||||||    
T  2815123 tattggactcatcctacgatatgagttcttacgcgtatgtttgaa 2815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 18402925 - 18402877
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgttt 568  Q
    |||||| ||||| |||||||| |||||||||||||||||  ||||||||    
T  18402925 actaacgtattgaactcatccatcgatctgagttcttacatgtttgttt 18402877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 30257441 - 30257481
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||| ||||| ||||||||||||||||||||| ||||||||    
T  30257441 taacgtattgaactcatccctcgatctgagtttttacgcgt 30257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 53813945 - 53813909
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  53813945 tattgaactcatccctcgatctgagtttttacgcgtt 53813909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 522 - 589
Target Start/End: Original strand, 5136197 - 5136264
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||    
T  5136197 taacgtattggactcatccctcgatctgagttcttacgcgtctgttggaaaccgttgtatttggtggt 5136264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 522 - 589
Target Start/End: Complemental strand, 18482149 - 18482082
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggt 589  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |||||    
T  18482149 taacatattggactcatccctcgatctgagttcttacgcgtctcttggaaaccgttgtgtttagtggt 18482082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 589
Target Start/End: Original strand, 39228906 - 39228976
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactg-ttgtgtttggtggt 589  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  39228906 actaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactgcttgtgtttggtggt 39228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 588
Target Start/End: Complemental strand, 12419579 - 12419510
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtgg 588  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  12419579 actaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtgg 12419510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 588
Target Start/End: Complemental strand, 12431639 - 12431570
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtgg 588  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  12431639 actaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtgg 12431570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 9848124 - 9848160
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  9848124 tattggactcatccctcgatctgagttcttacgcgtt 9848160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 559
Target Start/End: Original strand, 38002028 - 38002067
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacg 559  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  38002028 actaacgtattggactcatccctcgatctgagttcttacg 38002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 588
Target Start/End: Original strand, 4730707 - 4730776
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtgg 588  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||  | ||| ||| |||||||||||||||    
T  4730707 actaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtgg 4730776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 20105360 - 20105400
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  20105360 taacgtattggactcatcactcgatctgagttcttacgcgt 20105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 36254598 - 36254634
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36254598 tattggactcatccctcgatctgagttcttacacgtt 36254634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 5577961 - 5578071
Alignment:
Q  147 aaaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaa 246  Q
    ||||| ||||| ||||||||| | |||||| |||| ||  |||  ||||||| ||||||||||||  |||||||| |||| ||| ||||| ||| |||||    
T  5577961 aaagggaaatgttaatttgtgtccttaaggcacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaagtttaaa 5578060  T
Q  247 accatattttt 257  Q
    | | |||||||    
T  5578061 aacttattttt 5578071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 26009737 - 26009656
Alignment:
Q  153 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtct 234  Q
    ||||||||| ||||||| |||||| |||| ||  ||||  |||||||||||| ||||||  ||||| || ||||||||||||    
T  26009737 aaatgctaacttgtgcccttaaggcacaagtttagaagctaaatgtagaaatataattttggaaatcgtgcattcaatgtct 26009656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 27185801 - 27185834
Alignment:
Q  529 ttggactcatccctcgatctgagttcttacgcgt 562  Q
    |||||||||||||||||||||||||| |||||||    
T  27185801 ttggactcatccctcgatctgagttcatacgcgt 27185834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 27835343 - 27835376
Alignment:
Q  529 ttggactcatccctcgatctgagttcttacgcgt 562  Q
    |||||||||||||||||||||||||| |||||||    
T  27835343 ttggactcatccctcgatctgagttcatacgcgt 27835376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 34074119 - 34074227
Alignment:
Q  149 aggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaac 248  Q
    ||||||||||||| ||||||| | ||   |||| ||  ||||| |||||||||||||| ||||  ||||| || |||||||||| ||| ||| ||||||     
T  34074119 aggaaaatgctaacttgtgccctcaaaacacaagtttagaagttaaatgtagaaatttcattttggaaatcgtgcattcaatgttttgaaagtttaaaag 34074218  T
Q  249 catattttt 257  Q
    | |||||||    
T  34074219 cttattttt 34074227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 611
Target Start/End: Complemental strand, 33525642 - 33525580
Alignment:
Q  548 tgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatgatatttttgattctctgat 611  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  33525642 tgagttcttacgtgtttgtttgaaaccgttgtgtttggtggtatgat-tttttgcttctctgat 33525580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 1029778 - 1029727
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 571  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  1029778 actaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 1029727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 11954636 - 11954570
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa-actgttgtgtttggtg 587  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||||||  | |||||||||||||    
T  11954636 taacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgtttggtg 11954570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 10659230 - 10659194
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  10659230 tattggactcatccctcgatctgagttcttacgcgtt 10659194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 41566189 - 41566240
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 571  Q
    |||||| |||| |||||||||| |||||||||||||||||||| ||||||||    
T  41566189 actaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaa 41566240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 14442644 - 14442608
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14442644 tattagactcatccctcgatctgagttcttacgcgtt 14442608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 7637573 - 7637680
Alignment:
Q  150 ggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaacc 249  Q
    ||||||||||||||| || | |||||| |||| ||  |||||||||||||||| |||  |||   ||||||| |||||||||||||| || |||| || |    
T  7637573 ggaaaatgctaatttttgtccttaaggcacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaaagttacaaac 7637672  T
Q  250 atattttt 257  Q
     |||||||    
T  7637673 ttattttt 7637680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 505
Target Start/End: Complemental strand, 10659355 - 10659270
Alignment:
Q  419 tagactggtgggtttagatttgacctttttgccgtggaatgttttgtaaagccgaaagggtttggtgtgattcaaaaacccgaaagg 505  Q
    |||||||||||| | | ||||| ||||||||  ||||| |  || ||||| |||||||||||||||||| ||||| |||||||||||    
T  10659355 tagactggtgggatcaaatttggcctttttgttgtggacttattcgtaaacccgaaagggtttggtgtg-ttcaataacccgaaagg 10659270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 593
Target Start/End: Original strand, 38731816 - 38731870
Alignment:
Q  540 cctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtggtatga 593  Q
    ||||||| ||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  38731816 cctcgatgtgagttcttacgcgtttgtttgaaaccaattgtgtttggtggcatga 38731870  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 39699420 - 39699501
Alignment:
Q  154 aatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttg 236  Q
    |||||||| |||| ||||||||  |||||||  |||||||||||||| |||||| |||   |||||||||||| |||||||||    
T  39699420 aatgctaacttgttcctttaagc-acaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttg 39699501  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 41940131 - 41940095
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  41940131 tattgaactcatccctcgatctgagtttttacgcgtt 41940095  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 520 - 586
Target Start/End: Original strand, 48563262 - 48563329
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaact-gttgtgtttggt 586  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||||||||||||    
T  48563262 actaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggt 48563329  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 14168007 - 14167947
Alignment:
Q  529 ttggactcatccctcgatctgagttcttacgcgtttgtttgaaa-ctgttgtgtttggtgg 588  Q
    ||||||||||||||||||||| || ||||||||| | ||||||| ||||||||||||||||    
T  14168007 ttggactcatccctcgatctgggtccttacgcgtgtatttgaaacctgttgtgtttggtgg 14167947  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 26925153 - 26925117
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  26925153 tattggactcatccctcgatctgagttcttacgcgtt 26925117  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 33323910 - 33323946
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  33323910 tattggactcatccctcgatctgagttcttacgcgtt 33323946  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 50959558 - 50959522
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  50959558 tattggactcatccctcgatctgagttcttacgcgtt 50959522  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 34462717 - 34462812
Alignment:
Q  148 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggtt 243  Q
    |||| ||||| ||| ||||||| |||||  |||| ||  ||||||||||||||||||||| |||   ||||||| |||||||||||||| ||||||    
T  34462717 aaggtaaatgttaacttgtgcccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggtt 34462812  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 1640337 - 1640228
Alignment:
Q  148 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 247  Q
    |||||||||| ||| |||| || | |||| |||| ||  ||||| ||||||||||| |||||||   ||||||| |||||||||||||| ||| ||||||    
T  1640337 aaggaaaatggtaacttgtaccctaaaggcacaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaagtttaaaa 1640238  T
Q  248 ccatattttt 257  Q
     | |||||||    
T  1640237 acttattttt 1640228  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 559
Target Start/End: Original strand, 16256488 - 16256520
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacg 559  Q
    |||||||||||||||||||||||||||||||||    
T  16256488 tattggactcatccctcgatctgagttcttacg 16256520  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 18629002 - 18628966
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||||||||||||||| |||||||||||||||||||    
T  18629002 tattggactcatccctcaatctgagttcttacgcgtt 18628966  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 23777055 - 23777091
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23777055 tattggactcatccctcgatctgagttcctacgcgtt 23777091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 589
Target Start/End: Complemental strand, 2688487 - 2688417
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtggt 589  Q
    |||||| ||||||||||||||| ||||||||||||| |||| |  | ||| ||| ||||||||||||||||    
T  2688487 actaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtggt 2688417  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 592
Target Start/End: Original strand, 16219131 - 16219201
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactgttgtgtttggtggtatg 592  Q
    |||| |||| ||||||||| | ||||||||||||||||||| | || ||||| |||||||| | |||||||    
T  16219131 taacgtattagactcatcctttgatctgagttcttacgcgtctcttggaaaccgttgtgttggttggtatg 16219201  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 18919258 - 18919352
Alignment:
Q  153 aaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaa 247  Q
    ||||| ||| ||||||| |||||| |||| ||   ||| |||||||||||| ||| |||   ||||||| |||||||||||||| ||||||||||    
T  18919258 aaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaaggttaaaa 18919352  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 559
Target Start/End: Complemental strand, 27901261 - 27901223
Alignment:
Q  521 ctaacatattggactcatccctcgatctgagttcttacg 559  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  27901261 ctaatatattggactcatccctcgatcagagttcttacg 27901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 571
Target Start/End: Original strand, 52148831 - 52148880
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 571  Q
    |||| ||||||| || |||||||||||||||||||| |||| ||||||||    
T  52148831 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaa 52148880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 8327033 - 8326997
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  8327033 tattgaactcatccctcgatctgagtttttacgcgtt 8326997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 559
Target Start/End: Original strand, 15394655 - 15394687
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacg 559  Q
    |||||||| ||||||||||||||||||||||||    
T  15394655 tattggacgcatccctcgatctgagttcttacg 15394687  T

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Target: scaffold0914 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 524 - 572
Target Start/End: Complemental strand, 843 - 795
Alignment:
Q  524 acatattggactcatccctcgatctgagttcttacgcgtttgtttgaaa 572  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  843 acatattggactcatccctcgatctgagttcttacacgtttgattgaaa 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 562
Target Start/End: Complemental strand, 353274 - 353236
Alignment:
Q  524 acatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||||||||||||||||||||||||||||||||||||||    
T  353274 acatattggactcatccctcgatctgagttcttacgcgt 353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 575
Target Start/End: Original strand, 18274034 - 18274089
Alignment:
Q  520 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactg 575  Q
    ||||||| |||||||||||| ||||||| ||||| |||||||| ||||||||||||    
T  18274034 actaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaaactg 18274089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 30208 - 30306
Alignment:
Q  148 aaggaaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaa 246  Q
    |||| |||||||||  ||| || |||||| | || ||| |||| |||||||||||||| |||||   ||||||| |||||||||||||| |||||||||    
T  30208 aagggaaatgctaacatgtaccattaaggcataagttaagaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaaggttaaa 30306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 5736141 - 5736036
Alignment:
Q  152 aaaatgctaatttgtgcctttaaggtacaaattaggaagtcaaatgtagaaatttaatttgtgaaattgtacattcaatgtcttggaaggttaaaaccat 251  Q
    |||||| ||| ||||||| ||||| ||||| ||  | || |||||||||||| ||| |||  |||||||| |||||||||||||  || ||||||| | |    
T  5736141 aaaatgttaacttgtgcccttaagatacaagtttagtagccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttcaaaagttaaaaactt 5736042  T
Q  252 attttt 257  Q
    ||||||    
T  5736041 attttt 5736036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Original strand, 12566925 - 12566961
Alignment:
Q  527 tattggactcatccctcgatctgagttcttacgcgtt 563  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  12566925 tattgaactcatccctcgatctgagtttttacgcgtt 12566961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 24099440 - 24099480
Alignment:
Q  522 taacatattggactcatccctcgatctgagttcttacgcgt 562  Q
    |||| ||||| ||||||||||||||||||||| ||||||||    
T  24099440 taacgtattgaactcatccctcgatctgagtttttacgcgt 24099480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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