View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15362_low_2 (Length: 594)
Name: NF15362_low_2
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15362_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 39982000 - 39981425
Alignment:
| Q |
1 |
attacacaggtcagatgggatgaggatattggggctaatcatcaagatagagtctctccttgggagattgatccatctacttctctccctcccttgaaca |
100 |
Q |
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| T |
39982000 |
attacacaggtcagatgggatgaggatattggggctaatcatcaagatagagtctctccttgggagattgatccgtctacttctctccctcccttgaaca |
39981901 |
T |
|
| Q |
101 |
ttcaatcttctcgaaggctgaagaaactgcggacgggtctgcatgttgaatcaccgagtcaccttatcactggtatgaatccaaatgctgagatagctaa |
200 |
Q |
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| T |
39981900 |
ttcaatcttctcgaaggctgaagaaactgcggacgggtctgcatgttgaatcaccgagtcactttatcactggtatgaatccaaatgctgagatagctaa |
39981801 |
T |
|
| Q |
201 |
atagcattaatcactaaacatattgtgtcctaatcaccccatcgtcatcgcagctggagacagtgggtttatggactttgatgagtctataagatcatcc |
300 |
Q |
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| T |
39981800 |
atagcattaatcactaaacatattgtgtcctaatcaccccatcgtcatcgcagctggagacagtgggtttatggactttgatgagtctataagatcatcc |
39981701 |
T |
|
| Q |
301 |
aaggtcttgcaaggtcaagaaaaaacaagttttatgtcactatattatggatgtgacacagtaactaagcagaaagaatttgatatcaattctctaagac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981700 |
aaggtcttgcaaggtcaagaaaaaacaagttttatgtcactatattatggatgtgacacagtaactaagcagaaagaatttgatatcaattctctaagac |
39981601 |
T |
|
| Q |
401 |
atactaatcttgcatcaaatggagcaagaaaaattacttcttctgagtttacgaggattcaaccttctagttatgcagacttcatggaaatgaaccggtt |
500 |
Q |
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| T |
39981600 |
atactaatcttgcatcaaatggagcaagaaaaattacttcttctgagtttacgaggattcaaccttctagttatgcagacttcacggaaatgaaccggtt |
39981501 |
T |
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| Q |
501 |
tcctagggtcttgcaagctcaagaaatatatccattgagatccccgacaggaaaggttgatctaaaccttaactct |
576 |
Q |
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| T |
39981500 |
tcctagggtcttgcaagctcaagaaatatatccattgagatccctgacaggaaaggttgatctaaaccttaactct |
39981425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 22237886 - 22238074
Alignment:
| Q |
6 |
acaggtcagatgggatgaggatattggggctaatcatcaagatagagtctctccttgggagattgatccatctacttctctccctcccttgaacattcaa |
105 |
Q |
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|||||| ||||||||||| |||| || | ||||||||||||| |||| ||||| |||||||| ||||| ||| || ||| |||||| | | |||||| |
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| T |
22237886 |
acaggtaagatgggatgatgatactgagactaatcatcaagaccgagtatctccatgggagatcgatccttcttctcctcagcctcccctaagcattcag |
22237985 |
T |
|
| Q |
106 |
tcttctcgaaggctgaagaaactgcggacgggtctgcatgttgaatcaccgagtcaccttatcactggtatgaatccaaatgctgagat |
194 |
Q |
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| T |
22237986 |
tcttccccaagactgaagaaaccgcggaccggtctactggttgcctcacccaatcacctcatcactggtatgaatcctaatggtgagat |
22238074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 22238384 - 22238472
Alignment:
| Q |
277 |
tttgatgagtctataagatcatccaaggtcttgcaaggtcaagaaaaaacaagttttatgtcactatattatggatgtgacacagtaac |
365 |
Q |
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||||| ||||| |||||||| | ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
22238384 |
tttgaggagtcagtaagatcaccaaaggtcttgcaaggtcaagaaaatacaggttttatgtcactatactatggatgtgacaaagtaac |
22238472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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